Analysis of interatomic Contacts of Structural Units in PDB entry:
7C06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7C06 entry

There are 27 chains in PDB entry 7C06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLU 194
B	GLU 106	ALA 161
C	U 1	U 5
D	SER 7	GLU 193
E	ARG 110	GLY 160
F	U 1	U 5
G	ALA 2	GLU 193
H	SER 108	GLY 160
I	U 1	U 5
J	ALA 2	GLU 194
K	SER 108	ALA 161
L	U 1	U 5
M	VAL 16	GLU 193
N	SER 108	GLY 160
O	U 1	U 5
P	ALA 2	GLU 193
Q	SER 108	GLY 160
R	U 1	U 5
S	ALA 6	GLU 193
T	SER 111	GLY 160
U	U 1	U 5
V	VAL 16	ALA 192
W	SER 108	GLY 160
X	U 1	U 5
Y	VAL 16	GLU 194
Z	GLU 113	GLY 160
1	U 1	U 5

There are103 helices in PDB entry 7C06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	25	Right-handed alpha
Helix 2	AA2	A	29	33	Right-handed 310
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	60	64	Right-handed 310
Helix 5	AA5	A	65	86	Right-handed alpha
Helix 6	AA6	A	113	125	Right-handed alpha
Helix 7	AA7	A	143	147	Right-handed 310
Helix 8	AA8	A	149	154	Right-handed alpha
Helix 9	AA9	A	159	163	Right-handed 310
Helix 10	AB1	A	172	190	Right-handed alpha
Helix 11	AB2	B	107	119	Right-handed alpha
Helix 12	AB3	B	146	153	Right-handed alpha
Helix 13	AB4	D	18	25	Right-handed alpha
Helix 14	AB5	D	29	33	Right-handed 310
Helix 15	AB6	D	54	58	Right-handed 310
Helix 16	AB7	D	60	64	Right-handed 310
Helix 17	AB8	D	65	86	Right-handed alpha
Helix 18	AB9	D	113	125	Right-handed alpha
Helix 19	AC1	D	143	147	Right-handed 310
Helix 20	AC2	D	149	154	Right-handed alpha
Helix 21	AC3	D	159	163	Right-handed 310
Helix 22	AC4	D	172	190	Right-handed alpha
Helix 23	AC5	E	112	119	Right-handed alpha
Helix 24	AC6	E	146	154	Right-handed alpha
Helix 25	AC7	G	18	25	Right-handed alpha
Helix 26	AC8	G	29	33	Right-handed 310
Helix 27	AC9	G	54	64	Right-handed 310
Helix 28	AD1	G	65	86	Right-handed alpha
Helix 29	AD2	G	113	125	Right-handed alpha
Helix 30	AD3	G	143	147	Right-handed 310
Helix 31	AD4	G	149	154	Right-handed alpha
Helix 32	AD5	G	159	163	Right-handed 310
Helix 33	AD6	G	172	190	Right-handed alpha
Helix 34	AD7	H	109	119	Right-handed alpha
Helix 35	AD8	H	146	154	Right-handed alpha
Helix 36	AD9	J	18	25	Right-handed alpha
Helix 37	AE1	J	29	33	Right-handed 310
Helix 38	AE2	J	54	58	Right-handed 310
Helix 39	AE3	J	65	86	Right-handed alpha
Helix 40	AE4	J	113	125	Right-handed alpha
Helix 41	AE5	J	143	147	Right-handed 310
Helix 42	AE6	J	149	154	Right-handed alpha
Helix 43	AE7	J	159	163	Right-handed 310
Helix 44	AE8	J	172	193	Right-handed alpha
Helix 45	AE9	K	109	119	Right-handed alpha
Helix 46	AF1	K	146	154	Right-handed alpha
Helix 47	AF2	M	18	25	Right-handed alpha
Helix 48	AF3	M	29	33	Right-handed 310
Helix 49	AF4	M	54	58	Right-handed 310
Helix 50	AF5	M	60	64	Right-handed 310
Helix 51	AF6	M	65	86	Right-handed alpha
Helix 52	AF7	M	113	125	Right-handed alpha
Helix 53	AF8	M	143	147	Right-handed 310
Helix 54	AF9	M	149	154	Right-handed alpha
Helix 55	AG1	M	159	163	Right-handed 310
Helix 56	AG2	M	172	193	Right-handed alpha
Helix 57	AG3	N	109	119	Right-handed alpha
Helix 58	AG4	N	146	154	Right-handed alpha
Helix 59	AG5	P	18	25	Right-handed alpha
Helix 60	AG6	P	29	33	Right-handed 310
Helix 61	AG7	P	54	64	Right-handed 310
Helix 62	AG8	P	65	86	Right-handed alpha
Helix 63	AG9	P	113	125	Right-handed alpha
Helix 64	AH1	P	143	147	Right-handed 310
Helix 65	AH2	P	149	153	Right-handed 310
Helix 66	AH3	P	159	163	Right-handed 310
Helix 67	AH4	P	172	193	Right-handed alpha
Helix 68	AH5	Q	109	119	Right-handed alpha
Helix 69	AH6	Q	141	145	Right-handed 310
Helix 70	AH7	Q	146	154	Right-handed alpha
Helix 71	AH8	S	18	25	Right-handed alpha
Helix 72	AH9	S	29	33	Right-handed 310
Helix 73	AI1	S	65	86	Right-handed alpha
Helix 74	AI2	S	113	125	Right-handed alpha
Helix 75	AI3	S	143	147	Right-handed 310
Helix 76	AI4	S	149	154	Right-handed alpha
Helix 77	AI5	S	159	163	Right-handed 310
Helix 78	AI6	S	172	193	Right-handed alpha
Helix 79	AI7	T	112	119	Right-handed alpha
Helix 80	AI8	T	141	145	Right-handed 310
Helix 81	AI9	T	146	154	Right-handed alpha
Helix 82	AJ1	V	18	25	Right-handed alpha
Helix 83	AJ2	V	29	33	Right-handed 310
Helix 84	AJ3	V	65	86	Right-handed alpha
Helix 85	AJ4	V	113	125	Right-handed alpha
Helix 86	AJ5	V	143	147	Right-handed 310
Helix 87	AJ6	V	149	153	Right-handed 310
Helix 88	AJ7	V	159	163	Right-handed 310
Helix 89	AJ8	V	172	190	Right-handed alpha
Helix 90	AJ9	W	109	119	Right-handed alpha
Helix 91	AK1	W	146	153	Right-handed alpha
Helix 92	AK2	Y	18	25	Right-handed alpha
Helix 93	AK3	Y	29	33	Right-handed 310
Helix 94	AK4	Y	54	64	Right-handed 310
Helix 95	AK5	Y	65	86	Right-handed alpha
Helix 96	AK6	Y	113	125	Right-handed alpha
Helix 97	AK7	Y	143	147	Right-handed 310
Helix 98	AK8	Y	149	154	Right-handed alpha
Helix 99	AK9	Y	159	163	Right-handed 310
Helix 100	AL1	Y	172	193	Right-handed alpha
Helix 101	AL2	Z	114	119	Right-handed alpha
Helix 102	AL3	Z	141	145	Right-handed 310
Helix 103	AL4	Z	146	154	Right-handed alpha

There are 9 sheets in PDB entry 7C06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	97	first strand
Strand 2	A	104	111	anti-parallel
Strand 3	A	45	48	anti-parallel
Strand 4	A	137	139	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	97	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	45	48	anti-parallel
Strand 4	D	137	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	95	first strand
Strand 2	G	107	111	anti-parallel
Strand 3	G	45	48	anti-parallel
Strand 4	G	137	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	90	97	first strand
Strand 2	J	104	111	anti-parallel
Strand 3	J	45	48	anti-parallel
Strand 4	J	137	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	90	95	first strand
Strand 2	M	107	111	anti-parallel
Strand 3	M	45	48	anti-parallel
Strand 4	M	137	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	90	95	first strand
Strand 2	P	107	111	anti-parallel
Strand 3	P	45	48	anti-parallel
Strand 4	P	137	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	90	97	first strand
Strand 2	S	104	111	anti-parallel
Strand 3	S	45	48	anti-parallel
Strand 4	S	137	139	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	90	97	first strand
Strand 2	V	104	111	anti-parallel
Strand 3	V	45	48	anti-parallel
Strand 4	V	137	139	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	90	97	first strand
Strand 2	Y	104	111	anti-parallel
Strand 3	Y	45	48	anti-parallel
Strand 4	Y	137	138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7C06

Analysis of interatomic Contacts of Structural Units in PDB entry:
7C06