Analysis of interatomic Contacts of Structural Units in PDB entry:
7C0R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C0R entry

There are 2 chains in PDB entry 7C0R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0ARG 396
B
 MET 0SER 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 7C0R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 13Right-handed alpha
Helix 2
AA2
A
25 43Right-handed alpha
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
79 89Right-handed alpha
Helix 5
AA5
A
95 99Right-handed 310
Helix 6
AA6
A
106 113Right-handed alpha
Helix 7
AA7
A
135 141Right-handed alpha
Helix 8
AA8
A
148 164Right-handed alpha
Helix 9
AA9
A
173 184Right-handed alpha
Helix 10
AB1
A
198 214Right-handed alpha
Helix 11
AB2
A
224 229Right-handed 310
Helix 12
AB3
A
243 251Right-handed alpha
Helix 13
AB4
A
285 300Right-handed alpha
Helix 14
AB5
A
301 313Right-handed alpha
Helix 15
AB6
A
318 323Right-handed alpha
Helix 16
AB7
A
324 334Right-handed alpha
Helix 17
AB8
A
335 345Right-handed alpha
Helix 18
AB9
A
355 363Right-handed alpha
Helix 19
AC1
A
363 374Right-handed alpha
Helix 20
AC2
A
377 395Right-handed alpha
Helix 21
AC3
B
1 12Right-handed alpha
Helix 22
AC4
B
25 43Right-handed alpha
Helix 23
AC5
B
55 69Right-handed alpha
Helix 24
AC6
B
79 89Right-handed alpha
Helix 25
AC7
B
95 99Right-handed 310
Helix 26
AC8
B
106 113Right-handed alpha
Helix 27
AC9
B
135 141Right-handed alpha
Helix 28
AD1
B
148 164Right-handed alpha
Helix 29
AD2
B
173 184Right-handed alpha
Helix 30
AD3
B
198 214Right-handed alpha
Helix 31
AD4
B
224 229Right-handed 310
Helix 32
AD5
B
243 251Right-handed alpha
Helix 33
AD6
B
285 300Right-handed alpha
Helix 34
AD7
B
301 313Right-handed alpha
Helix 35
AD8
B
318 323Right-handed alpha
Helix 36
AD9
B
324 334Right-handed alpha
Helix 37
AE1
B
335 345Right-handed alpha
Helix 38
AE2
B
355 363Right-handed alpha
Helix 39
AE3
B
363 374Right-handed alpha
Helix 40
AE4
B
377 395Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 7C0R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
15 21parallel
Strand 3
A
75 78parallel
Strand 4
A
271 280anti-parallel
Strand 5
A
122 134anti-parallel
Strand 6
A
255 258anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
122 134anti-parallel
Strand 3
A
271 280anti-parallel
Strand 4
A
347 348parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
217 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
193 194anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
15 21parallel
Strand 3
B
75 78parallel
Strand 4
B
271 280anti-parallel
Strand 5
B
122 134anti-parallel
Strand 6
B
255 258anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 240first strand
Strand 2
B
122 134anti-parallel
Strand 3
B
271 280anti-parallel
Strand 4
B
347 348parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
118 119anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
217 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
193 194anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il