Analysis of interatomic Contacts of Structural Units in PDB entry:
7C13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C13 entry

There are 3 chains in PDB entry 7C13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 7ILE 208
B
 GLU 4LEU 74
C
 GLU 4LEU 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7C13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 25Right-handed alpha
Helix 2
AA2
A
67 78Right-handed alpha
Helix 3
AA3
A
87 90Right-handed 310
Helix 4
AA4
A
98 117Right-handed alpha
Helix 5
AA5
A
134 138Right-handed 310
Helix 6
AA6
A
139 144Right-handed alpha
Helix 7
AA7
A
145 157Right-handed alpha
Helix 8
AA8
A
158 164Right-handed alpha
Helix 9
AA9
A
165 176Right-handed alpha
Helix 10
AB1
A
180 192Right-handed alpha
Helix 11
AB2
A
195 207Right-handed alpha
Helix 12
AB3
B
15 26Right-handed alpha
Helix 13
AB4
B
38 48Right-handed alpha
Helix 14
AB5
B
67 74Right-handed alpha
Helix 15
AB6
C
13 26Right-handed alpha
Helix 16
AB7
C
38 47Right-handed alpha
Helix 17
AB8
C
67 73Right-handed alpha
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There are 4 sheets in PDB entry 7C13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
92 96parallel
Strand 3
A
8 14anti-parallel
Strand 4
A
54 61anti-parallel
Strand 5
A
30 38anti-parallel
Strand 6
A
131 132anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
31 34parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
61 64anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 34first strand
Strand 2
C
5 9parallel
Strand 3
C
55 58anti-parallel
Strand 4
C
61 64anti-parallel
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