Analysis of interatomic Contacts of Structural Units in PDB entry:
7C1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C1E entry

There are 2 chains in PDB entry 7C1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 342
B
 MET 1VAL 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7C1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
33 45Right-handed alpha
Helix 3
AA3
A
63 71Right-handed alpha
Helix 4
AA4
A
90 95Right-handed alpha
Helix 5
AA5
A
95 114Right-handed alpha
Helix 6
AA6
A
126 130Right-handed 310
Helix 7
AA7
A
132 136Right-handed 310
Helix 8
AA8
A
159 182Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
213 224Right-handed alpha
Helix 11
AB2
A
242 255Right-handed alpha
Helix 12
AB3
A
256 259Right-handed 310
Helix 13
AB4
A
271 283Right-handed alpha
Helix 14
AB5
A
284 287Right-handed 310
Helix 15
AB6
A
298 302Right-handed 310
Helix 16
AB7
A
310 318Right-handed alpha
Helix 17
AB8
A
323 339Right-handed alpha
Helix 18
AB9
B
10 23Right-handed alpha
Helix 19
AC1
B
33 45Right-handed alpha
Helix 20
AC2
B
63 71Right-handed alpha
Helix 21
AC3
B
90 95Right-handed alpha
Helix 22
AC4
B
95 114Right-handed alpha
Helix 23
AC5
B
126 130Right-handed 310
Helix 24
AC6
B
132 136Right-handed 310
Helix 25
AC7
B
159 182Right-handed alpha
Helix 26
AC8
B
204 208Right-handed 310
Helix 27
AC9
B
213 224Right-handed alpha
Helix 28
AD1
B
242 255Right-handed alpha
Helix 29
AD2
B
256 259Right-handed 310
Helix 30
AD3
B
271 283Right-handed alpha
Helix 31
AD4
B
284 287Right-handed 310
Helix 32
AD5
B
298 302Right-handed 310
Helix 33
AD6
B
310 318Right-handed alpha
Helix 34
AD7
B
323 339Right-handed alpha
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There are 6 sheets in PDB entry 7C1E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
27 31parallel
Strand 3
A
2 6parallel
Strand 4
A
74 79parallel
Strand 5
A
120 124parallel
Strand 6
A
189 195parallel
Strand 7
A
262 265parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
307 308parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
237 241parallel
Strand 3
A
269 270anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
27 31parallel
Strand 3
B
2 6parallel
Strand 4
B
74 79parallel
Strand 5
B
120 124parallel
Strand 6
B
189 195parallel
Strand 7
B
262 265parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
307 308parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 199first strand
Strand 2
B
237 241parallel
Strand 3
B
269 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il