Analysis of interatomic Contacts of Structural Units in PDB entry:
7C3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7C3J entry

There are 2 chains in PDB entry 7C3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	LEU 512
B	GLU 4	LEU 512

There are 52 helices in PDB entry 7C3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	30	Right-handed alpha
Helix 2	AA2	A	72	74	Right-handed 310
Helix 3	AA3	A	75	86	Right-handed alpha
Helix 4	AA4	A	119	123	Right-handed 310
Helix 5	AA5	A	127	132	Right-handed alpha
Helix 6	AA6	A	133	152	Right-handed alpha
Helix 7	AA7	A	152	161	Right-handed alpha
Helix 8	AA8	A	162	164	Right-handed 310
Helix 9	AA9	A	167	175	Right-handed alpha
Helix 10	AB1	A	185	197	Right-handed alpha
Helix 11	AB2	A	200	204	Right-handed 310
Helix 12	AB3	A	205	217	Right-handed alpha
Helix 13	AB4	A	231	242	Right-handed alpha
Helix 14	AB5	A	287	293	Right-handed alpha
Helix 15	AB6	A	296	300	Right-handed 310
Helix 16	AB7	A	302	312	Right-handed alpha
Helix 17	AB8	A	327	332	Right-handed alpha
Helix 18	AB9	A	372	380	Right-handed alpha
Helix 19	AC1	A	393	407	Right-handed alpha
Helix 20	AC2	A	412	419	Right-handed alpha
Helix 21	AC3	A	430	432	Right-handed 310
Helix 22	AC4	A	445	455	Right-handed alpha
Helix 23	AC5	A	467	471	Right-handed 310
Helix 24	AC6	A	476	495	Right-handed alpha
Helix 25	AC7	A	497	509	Right-handed alpha
Helix 26	AC8	B	16	30	Right-handed alpha
Helix 27	AC9	B	72	74	Right-handed 310
Helix 28	AD1	B	75	85	Right-handed alpha
Helix 29	AD2	B	119	123	Right-handed 310
Helix 30	AD3	B	127	132	Right-handed alpha
Helix 31	AD4	B	133	152	Right-handed alpha
Helix 32	AD5	B	152	161	Right-handed alpha
Helix 33	AD6	B	162	164	Right-handed 310
Helix 34	AD7	B	167	175	Right-handed alpha
Helix 35	AD8	B	185	197	Right-handed alpha
Helix 36	AD9	B	200	204	Right-handed 310
Helix 37	AE1	B	205	217	Right-handed alpha
Helix 38	AE2	B	231	242	Right-handed alpha
Helix 39	AE3	B	287	294	Right-handed alpha
Helix 40	AE4	B	296	300	Right-handed 310
Helix 41	AE5	B	302	312	Right-handed alpha
Helix 42	AE6	B	327	332	Right-handed alpha
Helix 43	AE7	B	372	380	Right-handed alpha
Helix 44	AE8	B	389	392	Right-handed 310
Helix 45	AE9	B	393	407	Right-handed alpha
Helix 46	AF1	B	412	419	Right-handed alpha
Helix 47	AF2	B	430	432	Right-handed 310
Helix 48	AF3	B	445	450	Right-handed alpha
Helix 49	AF4	B	450	455	Right-handed alpha
Helix 50	AF5	B	467	471	Right-handed 310
Helix 51	AF6	B	476	495	Right-handed alpha
Helix 52	AF7	B	497	509	Right-handed alpha

There are 14 sheets in PDB entry 7C3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	34	39	parallel
Strand 3	A	8	13	parallel
Strand 4	A	281	284	parallel
Strand 5	A	463	465	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	224	227	anti-parallel
Strand 3	A	89	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	101	103	anti-parallel
Strand 3	A	340	343	parallel
Strand 4	A	349	351	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	257	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	274	279	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	439	440	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	371	first strand
Strand 2	A	317	324	anti-parallel
Strand 3	A	420	428	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	8	13	parallel
Strand 3	B	281	284	parallel
Strand 4	B	463	465	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	224	227	anti-parallel
Strand 3	B	89	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	101	103	anti-parallel
Strand 3	B	340	343	parallel
Strand 4	B	349	351	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	257	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	274	279	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	439	440	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	371	first strand
Strand 2	B	317	324	anti-parallel
Strand 3	B	420	428	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7C3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7C3J