Analysis of interatomic Contacts of Structural Units in PDB entry:
7C5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C5X entry

There are 2 chains in PDB entry 7C5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 102ALA 607
B
 ALA 104LYS 591
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7C5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 131Right-handed alpha
Helix 2
AA2
A
134 147Right-handed alpha
Helix 3
AA3
A
169 179Right-handed alpha
Helix 4
AA4
A
180 183Right-handed 310
Helix 5
AA5
A
195 199Right-handed 310
Helix 6
AA6
A
270 295Right-handed alpha
Helix 7
AA7
A
297 310Right-handed alpha
Helix 8
AA8
A
332 342Right-handed alpha
Helix 9
AA9
A
356 363Right-handed 310
Helix 10
AB1
A
434 458Right-handed alpha
Helix 11
AB2
A
461 474Right-handed alpha
Helix 12
AB3
A
496 506Right-handed alpha
Helix 13
AB4
A
523 527Right-handed 310
Helix 14
AB5
A
594 606Right-handed alpha
Helix 15
AB6
B
107 131Right-handed alpha
Helix 16
AB7
B
134 147Right-handed alpha
Helix 17
AB8
B
169 178Right-handed alpha
Helix 18
AB9
B
179 183Right-handed 310
Helix 19
AC1
B
195 199Right-handed 310
Helix 20
AC2
B
270 295Right-handed alpha
Helix 21
AC3
B
297 310Right-handed alpha
Helix 22
AC4
B
332 342Right-handed alpha
Helix 23
AC5
B
356 363Right-handed 310
Helix 24
AC6
B
434 458Right-handed alpha
Helix 25
AC7
B
461 474Right-handed alpha
Helix 26
AC8
B
496 506Right-handed alpha
Helix 27
AC9
B
507 510Right-handed 310
Helix 28
AD1
B
520 527Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7C5X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
251 259parallel
Strand 3
A
234 245anti-parallel
Strand 4
A
217 228anti-parallel
Strand 5
A
201 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
415 423parallel
Strand 3
A
398 409anti-parallel
Strand 4
A
381 392anti-parallel
Strand 5
A
365 378anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
579 587parallel
Strand 3
A
562 573anti-parallel
Strand 4
A
545 556anti-parallel
Strand 5
A
529 542anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
251 259parallel
Strand 3
B
234 245anti-parallel
Strand 4
B
217 228anti-parallel
Strand 5
B
201 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 320first strand
Strand 2
B
415 423parallel
Strand 3
B
398 409anti-parallel
Strand 4
B
381 392anti-parallel
Strand 5
B
365 378anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
579 587parallel
Strand 3
B
562 573anti-parallel
Strand 4
B
545 556anti-parallel
Strand 5
B
529 542anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il