Analysis of interatomic Contacts of Structural Units in PDB entry:
7C72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7C72 entry

There are 2 chains in PDB entry 7C72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	VAL 675
B	ARG 4	VAL 668

There are 30 helices in PDB entry 7C72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	24	Right-handed alpha
Helix 2	AA2	A	45	48	Right-handed 310
Helix 3	AA3	A	74	78	Right-handed 310
Helix 4	AA4	A	191	195	Right-handed 310
Helix 5	AA5	A	457	465	Right-handed alpha
Helix 6	AA6	A	482	488	Right-handed alpha
Helix 7	AA7	A	495	511	Right-handed alpha
Helix 8	AA8	A	524	538	Right-handed alpha
Helix 9	AA9	A	552	560	Right-handed alpha
Helix 10	AB1	A	561	566	Right-handed 310
Helix 11	AB2	A	567	572	Right-handed alpha
Helix 12	AB3	A	578	586	Right-handed alpha
Helix 13	AB4	A	587	594	Right-handed 310
Helix 14	AB5	A	611	622	Right-handed alpha
Helix 15	AB6	A	642	662	Right-handed alpha
Helix 16	AB7	B	17	24	Right-handed alpha
Helix 17	AB8	B	45	48	Right-handed 310
Helix 18	AB9	B	74	78	Right-handed 310
Helix 19	AC1	B	191	195	Right-handed 310
Helix 20	AC2	B	398	402	Right-handed 310
Helix 21	AC3	B	457	465	Right-handed alpha
Helix 22	AC4	B	482	488	Right-handed alpha
Helix 23	AC5	B	495	511	Right-handed alpha
Helix 24	AC6	B	524	538	Right-handed alpha
Helix 25	AC7	B	552	558	Right-handed alpha
Helix 26	AC8	B	566	572	Right-handed alpha
Helix 27	AC9	B	578	586	Right-handed alpha
Helix 28	AD1	B	587	594	Right-handed 310
Helix 29	AD2	B	610	624	Right-handed alpha
Helix 30	AD3	B	642	660	Right-handed alpha

There are 18 sheets in PDB entry 7C72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	37	43	anti-parallel
Strand 3	A	51	57	anti-parallel
Strand 4	A	60	63	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	91	97	anti-parallel
Strand 3	A	104	108	anti-parallel
Strand 4	A	115	116	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	134	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	172	182	anti-parallel
Strand 4	A	196	200	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	210	first strand
Strand 2	A	216	222	anti-parallel
Strand 3	A	233	240	anti-parallel
Strand 4	A	243	252	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	265	first strand
Strand 2	A	268	273	anti-parallel
Strand 3	A	280	284	anti-parallel
Strand 4	A	292	294	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	321	325	anti-parallel
Strand 3	A	331	335	anti-parallel
Strand 4	A	342	344	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	362	368	anti-parallel
Strand 3	A	357	359	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	362	368	anti-parallel
Strand 3	A	375	380	anti-parallel
Strand 4	A	386	391	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	411	first strand
Strand 2	A	417	423	anti-parallel
Strand 3	A	469	474	anti-parallel
Strand 4	A	440	444	parallel
Strand 5	A	519	523	parallel
Strand 6	A	543	547	parallel
Strand 7	A	598	603	parallel
Strand 8	A	628	633	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	34	first strand
Strand 2	B	37	43	anti-parallel
Strand 3	B	51	57	anti-parallel
Strand 4	B	60	64	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	91	97	anti-parallel
Strand 3	B	104	107	anti-parallel
Strand 4	B	115	116	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	140	146	anti-parallel
Strand 3	B	178	183	anti-parallel
Strand 4	B	196	197	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	216	222	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	244	252	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	265	first strand
Strand 2	B	268	273	anti-parallel
Strand 3	B	280	284	anti-parallel
Strand 4	B	292	294	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	321	325	anti-parallel
Strand 3	B	331	335	anti-parallel
Strand 4	B	342	344	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	362	369	anti-parallel
Strand 3	B	357	359	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	362	369	anti-parallel
Strand 3	B	372	380	anti-parallel
Strand 4	B	386	391	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	411	first strand
Strand 2	B	417	423	anti-parallel
Strand 3	B	469	474	anti-parallel
Strand 4	B	440	444	parallel
Strand 5	B	519	523	parallel
Strand 6	B	543	547	parallel
Strand 7	B	598	603	parallel
Strand 8	B	628	633	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7C72

Analysis of interatomic Contacts of Structural Units in PDB entry:
7C72