Analysis of interatomic Contacts of Structural Units in PDB entry:
7C77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C77 entry

There are 2 chains in PDB entry 7C77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28GLU 727
B
 GLU 45PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7C77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 74Right-handed 310
Helix 2
AA2
A
93 99Right-handed alpha
Helix 3
AA3
A
189 193Right-handed 310
Helix 4
AA4
A
216 221Right-handed alpha
Helix 5
AA5
A
235 246Right-handed alpha
Helix 6
AA6
A
270 274Right-handed 310
Helix 7
AA7
A
450 454Right-handed 310
Helix 8
AA8
A
543 548Right-handed alpha
Helix 9
AA9
A
627 637Right-handed alpha
Helix 10
AB1
A
651 665Right-handed alpha
Helix 11
AB2
A
671 676Right-handed alpha
Helix 12
AB3
A
702 727Right-handed alpha
Helix 13
AB4
B
46 89Right-handed alpha
Helix 14
AB5
B
92 97Right-handed alpha
Helix 15
AB6
B
103 118Right-handed alpha
Helix 16
AB7
B
118 125Right-handed alpha
Helix 17
AB8
B
126 134Right-handed alpha
Helix 18
AB9
B
134 152Right-handed alpha
Helix 19
AC1
B
157 199Right-handed alpha
Helix 20
AC2
B
213 235Right-handed alpha
Helix 21
AC3
B
236 242Right-handed alpha
Helix 22
AC4
B
249 254Right-handed alpha
Helix 23
AC5
B
281 307Right-handed alpha
Helix 24
AC6
B
312 321Right-handed alpha
Helix 25
AC7
B
329 334Right-handed alpha
Helix 26
AC8
B
335 337Right-handed 310
Helix 27
AC9
B
339 359Right-handed alpha
Helix 28
AD1
B
374 395Right-handed alpha
Helix 29
AD2
B
403 419Right-handed alpha
Helix 30
AD3
B
432 461Right-handed alpha
Helix 31
AD4
B
463 488Right-handed alpha
Helix 32
AD5
B
494 517Right-handed alpha
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There are 8 sheets in PDB entry 7C77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
36 37anti-parallel
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There are 25 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
80 82parallel
Strand 3
A
104 106parallel
Strand 4
A
128 130parallel
Strand 5
A
152 154parallel
Strand 6
A
176 178parallel
Strand 7
A
199 204parallel
Strand 8
A
223 228parallel
Strand 9
A
253 255parallel
Strand 10
A
279 281parallel
Strand 11
A
303 305parallel
Strand 12
A
327 329parallel
Strand 13
A
360 362parallel
Strand 14
A
384 386parallel
Strand 15
A
412 414parallel
Strand 16
A
436 438parallel
Strand 17
A
461 463parallel
Strand 18
A
485 487parallel
Strand 19
A
511 513parallel
Strand 20
A
535 537parallel
Strand 21
A
567 569parallel
Strand 22
A
591 593parallel
Strand 23
A
615 617parallel
Strand 24
A
640 642parallel
Strand 25
A
668 669parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
212 213parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
289 290parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
346 347parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
422 423parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 447first strand
Strand 2
A
469 471parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 649first strand
Strand 2
A
677 680parallel
Strand 3
A
687 688anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il