Analysis of interatomic Contacts of Structural Units in PDB entry:
7C8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C8D entry

There are 2 chains in PDB entry 7C8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 18ALA 614
B
 THR 333PRO 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7C8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
56 81Right-handed alpha
Helix 3
AA3
A
82 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
90 102Right-handed alpha
Helix 6
AA6
A
109 128Right-handed alpha
Helix 7
AA7
A
146 155Right-handed alpha
Helix 8
AA8
A
157 171Right-handed alpha
Helix 9
AA9
A
176 194Right-handed alpha
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
220 252Right-handed alpha
Helix 12
AB3
A
275 282Right-handed 310
Helix 13
AB4
A
293 300Right-handed alpha
Helix 14
AB5
A
303 318Right-handed alpha
Helix 15
AB6
A
326 331Right-handed alpha
Helix 16
AB7
A
366 385Right-handed alpha
Helix 17
AB8
A
386 388Right-handed 310
Helix 18
AB9
A
389 393Right-handed 310
Helix 19
AC1
A
400 413Right-handed alpha
Helix 20
AC2
A
414 419Right-handed alpha
Helix 21
AC3
A
433 447Right-handed alpha
Helix 22
AC4
A
449 466Right-handed alpha
Helix 23
AC5
A
472 484Right-handed alpha
Helix 24
AC6
A
498 502Right-handed 310
Helix 25
AC7
A
503 508Right-handed alpha
Helix 26
AC8
A
513 533Right-handed alpha
Helix 27
AC9
A
547 559Right-handed alpha
Helix 28
AD1
A
560 564Right-handed 310
Helix 29
AD2
A
565 575Right-handed alpha
Helix 30
AD3
A
581 588Right-handed alpha
Helix 31
AD4
A
588 599Right-handed alpha
Helix 32
AD5
B
338 343Right-handed alpha
Helix 33
AD6
B
365 370Right-handed alpha
Helix 34
AD7
B
405 410Right-handed 310
Helix 35
AD8
B
416 421Right-handed alpha
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There are 7 sheets in PDB entry 7C8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
356 358anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
507 516anti-parallel
Strand 4
B
431 437anti-parallel
Strand 5
B
376 380anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
524 525anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il