Analysis of interatomic Contacts of Structural Units in PDB entry:
7C8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C8E entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7C8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3THR 232
B
 ASP 3THR 232
C
 ARG 7ASN 10
C
 ASN 12ASN 12
D
 GLY 6ASN 10
D
 ASN 12ASN 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7C8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
19 32Right-handed alpha
Helix 3
AA3
A
38 72Right-handed alpha
Helix 4
AA4
A
78 107Right-handed alpha
Helix 5
AA5
A
114 136Right-handed alpha
Helix 6
AA6
A
138 163Right-handed alpha
Helix 7
AA7
A
167 184Right-handed alpha
Helix 8
AA8
A
187 206Right-handed alpha
Helix 9
AA9
A
210 232Right-handed alpha
Helix 10
AB1
B
4 18Right-handed alpha
Helix 11
AB2
B
19 32Right-handed alpha
Helix 12
AB3
B
38 70Right-handed alpha
Helix 13
AB4
B
77 107Right-handed alpha
Helix 14
AB5
B
107 112Right-handed alpha
Helix 15
AB6
B
114 136Right-handed alpha
Helix 16
AB7
B
137 163Right-handed alpha
Helix 17
AB8
B
167 184Right-handed alpha
Helix 18
AB9
B
187 203Right-handed alpha
Helix 19
AC1
B
204 209Right-handed 310
Helix 20
AC2
B
210 231Right-handed alpha
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There are no sheets in PDB entry 7C8E
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il