Analysis of interatomic Contacts of Structural Units in PDB entry:
7C99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C99 entry

There are 5 chains in PDB entry 7C99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 22ASP 337
B
 GLN 22ASP 337
C
 GLN 22ASP 337
D
 T 1 T 9
E
 A 1 A 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7C99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
36 41Right-handed alpha
Helix 3
AA3
A
47 53Right-handed alpha
Helix 4
AA4
A
70 79Right-handed alpha
Helix 5
AA5
A
87 95Right-handed alpha
Helix 6
AA6
A
105 113Right-handed alpha
Helix 7
AA7
A
131 143Right-handed alpha
Helix 8
AA8
A
147 151Right-handed 310
Helix 9
AA9
A
166 168Right-handed 310
Helix 10
AB1
A
169 174Right-handed alpha
Helix 11
AB2
A
195 202Right-handed alpha
Helix 12
AB3
A
202 213Right-handed alpha
Helix 13
AB4
A
238 260Right-handed alpha
Helix 14
AB5
A
289 297Right-handed alpha
Helix 15
AB6
B
27 31Right-handed 310
Helix 16
AB7
B
36 41Right-handed alpha
Helix 17
AB8
B
47 53Right-handed alpha
Helix 18
AB9
B
70 79Right-handed alpha
Helix 19
AC1
B
88 95Right-handed alpha
Helix 20
AC2
B
105 113Right-handed alpha
Helix 21
AC3
B
131 143Right-handed alpha
Helix 22
AC4
B
147 151Right-handed 310
Helix 23
AC5
B
166 168Right-handed 310
Helix 24
AC6
B
169 174Right-handed alpha
Helix 25
AC7
B
195 202Right-handed alpha
Helix 26
AC8
B
202 213Right-handed alpha
Helix 27
AC9
B
238 260Right-handed alpha
Helix 28
AD1
B
289 297Right-handed alpha
Helix 29
AD2
C
27 31Right-handed 310
Helix 30
AD3
C
36 41Right-handed alpha
Helix 31
AD4
C
47 53Right-handed alpha
Helix 32
AD5
C
70 79Right-handed alpha
Helix 33
AD6
C
88 95Right-handed alpha
Helix 34
AD7
C
105 113Right-handed alpha
Helix 35
AD8
C
131 143Right-handed alpha
Helix 36
AD9
C
147 151Right-handed 310
Helix 37
AE1
C
166 168Right-handed 310
Helix 38
AE2
C
169 174Right-handed alpha
Helix 39
AE3
C
195 202Right-handed alpha
Helix 40
AE4
C
202 213Right-handed alpha
Helix 41
AE5
C
238 260Right-handed alpha
Helix 42
AE6
C
289 297Right-handed alpha
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There are 9 sheets in PDB entry 7C99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
311 313anti-parallel
Strand 3
A
299 305anti-parallel
Strand 4
A
121 125parallel
Strand 5
A
263 268parallel
Strand 6
A
217 222parallel
Strand 7
A
155 160parallel
Strand 8
A
188 192parallel
Strand 9
B
86 87anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
286 287anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
334 335anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 327first strand
Strand 2
B
311 313anti-parallel
Strand 3
B
299 305anti-parallel
Strand 4
B
121 125parallel
Strand 5
B
263 268parallel
Strand 6
B
217 222parallel
Strand 7
B
155 160parallel
Strand 8
B
188 192parallel
Strand 9
C
86 87anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
286 287anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
334 335anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 192first strand
Strand 2
C
155 160parallel
Strand 3
C
217 222parallel
Strand 4
C
263 268parallel
Strand 5
C
121 125parallel
Strand 6
C
299 305parallel
Strand 7
C
311 313anti-parallel
Strand 8
C
326 327anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
270 271first strand
Strand 2
C
286 287anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
330 331first strand
Strand 2
C
334 335anti-parallel
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