Analysis of interatomic Contacts of Structural Units in PDB entry:
7C9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C9M entry

There are 4 chains in PDB entry 7C9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6ALA 264
B
 ASN 6ALA 264
C
 SER 4ALA 263
D
 GLN 14ALA 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7C9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 29Right-handed alpha
Helix 2
AA2
A
32 47Right-handed alpha
Helix 3
AA3
A
49 59Right-handed alpha
Helix 4
AA4
A
61 93Right-handed alpha
Helix 5
AA5
A
99 106Right-handed alpha
Helix 6
AA6
A
109 113Right-handed 310
Helix 7
AA7
A
133 144Right-handed alpha
Helix 8
AA8
A
153 168Right-handed alpha
Helix 9
AA9
A
200 212Right-handed alpha
Helix 10
AB1
A
224 231Right-handed 310
Helix 11
AB2
B
7 29Right-handed alpha
Helix 12
AB3
B
32 47Right-handed alpha
Helix 13
AB4
B
49 59Right-handed alpha
Helix 14
AB5
B
63 93Right-handed alpha
Helix 15
AB6
B
99 111Right-handed alpha
Helix 16
AB7
B
133 144Right-handed alpha
Helix 17
AB8
B
153 168Right-handed alpha
Helix 18
AB9
B
179 183Right-handed 310
Helix 19
AC1
B
200 212Right-handed alpha
Helix 20
AC2
B
224 230Right-handed 310
Helix 21
AC3
C
7 29Right-handed alpha
Helix 22
AC4
C
32 49Right-handed alpha
Helix 23
AC5
C
49 59Right-handed alpha
Helix 24
AC6
C
62 93Right-handed alpha
Helix 25
AC7
C
99 110Right-handed alpha
Helix 26
AC8
C
133 144Right-handed alpha
Helix 27
AC9
C
153 168Right-handed alpha
Helix 28
AD1
C
179 183Right-handed 310
Helix 29
AD2
C
185 189Right-handed 310
Helix 30
AD3
C
200 212Right-handed alpha
Helix 31
AD4
C
224 230Right-handed 310
Helix 32
AD5
D
15 29Right-handed alpha
Helix 33
AD6
D
32 48Right-handed alpha
Helix 34
AD7
D
49 59Right-handed alpha
Helix 35
AD8
D
61 94Right-handed alpha
Helix 36
AD9
D
99 107Right-handed alpha
Helix 37
AE1
D
108 110Right-handed 310
Helix 38
AE2
D
133 144Right-handed alpha
Helix 39
AE3
D
153 168Right-handed alpha
Helix 40
AE4
D
185 189Right-handed 310
Helix 41
AE5
D
200 212Right-handed alpha
Helix 42
AE6
D
224 230Right-handed 310
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There are 3 sheets in PDB entry 7C9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
146 150parallel
Strand 3
A
123 127parallel
Strand 4
A
191 194parallel
Strand 5
A
217 222parallel
Strand 6
A
256 262anti-parallel
Strand 7
A
242 248anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
146 150parallel
Strand 3
B
123 127parallel
Strand 4
B
191 194parallel
Strand 5
B
217 222parallel
Strand 6
B
256 262anti-parallel
Strand 7
B
242 248anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 176first strand
Strand 2
C
146 150parallel
Strand 3
C
123 127parallel
Strand 4
C
191 194parallel
Strand 5
C
217 222parallel
Strand 6
C
256 262anti-parallel
Strand 7
C
242 249anti-parallel
Strand 8
D
242 249anti-parallel
Strand 9
D
256 262anti-parallel
Strand 10
D
217 222anti-parallel
Strand 11
D
191 194parallel
Strand 12
D
123 127parallel
Strand 13
D
146 150parallel
Strand 14
D
173 176parallel
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