Analysis of interatomic Contacts of Structural Units in PDB entry:
7C9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C9V entry

There are 6 chains in PDB entry 7C9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9SER 284
B
 ASP 11GLN 261
C
 GLY 1GLN 238
D
 GLY 2LEU 68
E
 LEU 5LEU 267
F
 ILE 1MET 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7C9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
59 62Right-handed 310
Helix 3
AA3
A
63 69Right-handed alpha
Helix 4
AA4
A
101 109Right-handed alpha
Helix 5
AA5
A
160 165Right-handed 310
Helix 6
AA6
A
210 214Right-handed 310
Helix 7
AA7
B
83 87Right-handed 310
Helix 8
AA8
B
90 98Right-handed alpha
Helix 9
AA9
B
178 182Right-handed 310
Helix 10
AB1
C
42 46Right-handed 310
Helix 11
AB2
C
64 68Right-handed 310
Helix 12
AB3
C
98 105Right-handed alpha
Helix 13
AB4
C
144 149Right-handed alpha
Helix 14
AB5
D
35 39Right-handed 310
Helix 15
AB6
D
50 55Right-handed alpha
Helix 16
AB7
E
60 77Right-handed alpha
Helix 17
AB8
E
131 142Right-handed alpha
Helix 18
AB9
E
143 145Right-handed 310
Helix 19
AC1
E
146 156Right-handed alpha
Helix 20
AC2
E
158 168Right-handed alpha
Helix 21
AC3
E
170 176Right-handed 310
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There are 18 sheets in PDB entry 7C9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
C
163 168anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
208 216anti-parallel
Strand 5
C
51 52anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
C
163 168anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
208 216anti-parallel
Strand 5
C
70 72anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
233 241anti-parallel
Strand 3
A
111 128anti-parallel
Strand 4
A
193 194anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
111 128anti-parallel
Strand 3
A
244 251anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
170 174anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
197 202parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
239 255anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
197 202parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
239 255anti-parallel
Strand 5
B
69 71anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
219 225anti-parallel
Strand 4
B
121 128anti-parallel
Strand 5
B
187 191anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 86first strand
Strand 2
C
189 199anti-parallel
Strand 3
C
127 135anti-parallel
Strand 4
C
152 157anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
107 111anti-parallel
Strand 3
C
221 225anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
26 27anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 38first strand
Strand 2
E
24 30anti-parallel
Strand 3
E
6 14anti-parallel
Strand 4
E
89 97anti-parallel
Strand 5
E
105 112anti-parallel
Strand 6
E
115 118anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 188first strand
Strand 2
E
193 203anti-parallel
Strand 3
E
234 243anti-parallel
Strand 4
E
225 226anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 213first strand
Strand 2
E
218 220anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 11first strand
Strand 2
F
21 30anti-parallel
Strand 3
F
62 67anti-parallel
Strand 4
F
55 56anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
50 51first strand
Strand 2
F
62 67anti-parallel
Strand 3
F
21 30anti-parallel
Strand 4
F
69 70anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
44 45first strand
Strand 2
F
36 41anti-parallel
Strand 3
F
79 83anti-parallel
Strand 4
F
91 94anti-parallel
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