Analysis of interatomic Contacts of Structural Units in PDB entry:
7C9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7C9W entry

There are 5 chains in PDB entry 7C9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9SER 284
B
 ASP 11GLN 261
C
 GLY 1GLN 238
D
 GLY 2LEU 68
E
 CYS 62GLY 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7C9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
59 62Right-handed 310
Helix 4
AA4
A
63 69Right-handed alpha
Helix 5
AA5
A
102 109Right-handed alpha
Helix 6
AA6
B
83 87Right-handed 310
Helix 7
AA7
B
91 96Right-handed alpha
Helix 8
AA8
B
169 173Right-handed 310
Helix 9
AA9
B
178 185Right-handed 310
Helix 10
AB1
C
60 68Right-handed 310
Helix 11
AB2
C
98 103Right-handed alpha
Helix 12
AB3
C
104 107Right-handed 310
Helix 13
AB4
C
144 149Right-handed alpha
Helix 14
AB5
C
182 186Right-handed 310
Helix 15
AB6
D
50 55Right-handed alpha
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There are 17 sheets in PDB entry 7C9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 79first strand
Strand 2
A
233 241anti-parallel
Strand 3
A
111 128anti-parallel
Strand 4
A
193 194anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
111 128anti-parallel
Strand 3
A
243 251anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
221 224anti-parallel
Strand 3
A
142 146anti-parallel
Strand 4
A
170 174anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
197 202parallel
Strand 3
B
103 111anti-parallel
Strand 4
B
240 251anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
197 202parallel
Strand 3
B
103 111anti-parallel
Strand 4
B
240 251anti-parallel
Strand 5
B
69 70anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
219 230anti-parallel
Strand 3
B
119 128anti-parallel
Strand 4
B
187 191anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
208 216anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
165 166anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 86first strand
Strand 2
C
189 199anti-parallel
Strand 3
C
127 135anti-parallel
Strand 4
C
152 157anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
109 111anti-parallel
Strand 3
C
221 223anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
26 29anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 77first strand
Strand 2
E
92 96anti-parallel
Strand 3
E
110 112anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 103first strand
Strand 2
E
126 128anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 143first strand
Strand 2
E
153 158anti-parallel
Strand 3
E
169 175anti-parallel
Strand 4
E
178 181anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
162 163first strand
Strand 2
E
189 190anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
202 204first strand
Strand 2
E
216 221anti-parallel
Strand 3
E
232 234anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
227 228first strand
Strand 2
E
250 251anti-parallel
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