Analysis of interatomic Contacts of Structural Units in PDB entry:
7CAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CAV entry

There are 8 chains in PDB entry 7CAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	ASP 214
B	GLY -2	GLY 219
C	ASP 2	GLY 219
D	ASP 2	GLY 219
E	ILE 3	GLN 213
F	ILE 3	GLY 219
G	GLY -2	GLY 219
H	ASP 2	ASP 214

There are 85 helices in PDB entry 7CAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	27	Right-handed alpha
Helix 2	AA2	A	30	37	Right-handed 310
Helix 3	AA3	A	38	53	Right-handed alpha
Helix 4	AA4	A	65	69	Right-handed 310
Helix 5	AA5	A	70	89	Right-handed alpha
Helix 6	AA6	A	107	114	Right-handed 310
Helix 7	AA7	A	133	140	Right-handed alpha
Helix 8	AA8	A	150	155	Right-handed 310
Helix 9	AA9	A	194	198	Right-handed 310
Helix 10	AB1	A	199	212	Right-handed alpha
Helix 11	AB2	B	19	27	Right-handed alpha
Helix 12	AB3	B	30	37	Right-handed 310
Helix 13	AB4	B	38	53	Right-handed alpha
Helix 14	AB5	B	65	69	Right-handed 310
Helix 15	AB6	B	70	89	Right-handed alpha
Helix 16	AB7	B	107	114	Right-handed 310
Helix 17	AB8	B	133	145	Right-handed alpha
Helix 18	AB9	B	148	154	Right-handed alpha
Helix 19	AC1	B	194	198	Right-handed 310
Helix 20	AC2	B	199	212	Right-handed alpha
Helix 21	AC3	C	19	27	Right-handed alpha
Helix 22	AC4	C	30	37	Right-handed 310
Helix 23	AC5	C	38	53	Right-handed alpha
Helix 24	AC6	C	65	69	Right-handed 310
Helix 25	AC7	C	70	90	Right-handed alpha
Helix 26	AC8	C	107	114	Right-handed 310
Helix 27	AC9	C	133	145	Right-handed alpha
Helix 28	AD1	C	148	152	Right-handed alpha
Helix 29	AD2	C	153	155	Right-handed 310
Helix 30	AD3	C	194	198	Right-handed 310
Helix 31	AD4	C	199	212	Right-handed alpha
Helix 32	AD5	D	19	27	Right-handed alpha
Helix 33	AD6	D	30	37	Right-handed 310
Helix 34	AD7	D	38	53	Right-handed alpha
Helix 35	AD8	D	65	69	Right-handed 310
Helix 36	AD9	D	70	90	Right-handed alpha
Helix 37	AE1	D	107	114	Right-handed 310
Helix 38	AE2	D	133	140	Right-handed alpha
Helix 39	AE3	D	141	142	Right-handed 310
Helix 40	AE4	D	150	155	Right-handed 310
Helix 41	AE5	D	194	198	Right-handed 310
Helix 42	AE6	D	199	212	Right-handed alpha
Helix 43	AE7	E	19	27	Right-handed alpha
Helix 44	AE8	E	30	37	Right-handed 310
Helix 45	AE9	E	38	53	Right-handed alpha
Helix 46	AF1	E	65	69	Right-handed 310
Helix 47	AF2	E	70	89	Right-handed alpha
Helix 48	AF3	E	107	114	Right-handed 310
Helix 49	AF4	E	133	140	Right-handed alpha
Helix 50	AF5	E	141	142	Right-handed 310
Helix 51	AF6	E	150	155	Right-handed 310
Helix 52	AF7	E	194	198	Right-handed 310
Helix 53	AF8	E	199	213	Right-handed alpha
Helix 54	AF9	F	19	27	Right-handed alpha
Helix 55	AG1	F	30	37	Right-handed 310
Helix 56	AG2	F	38	53	Right-handed alpha
Helix 57	AG3	F	65	69	Right-handed 310
Helix 58	AG4	F	70	90	Right-handed alpha
Helix 59	AG5	F	107	115	Right-handed 310
Helix 60	AG6	F	133	144	Right-handed alpha
Helix 61	AG7	F	148	152	Right-handed alpha
Helix 62	AG8	F	153	155	Right-handed 310
Helix 63	AG9	F	194	198	Right-handed 310
Helix 64	AH1	F	199	212	Right-handed alpha
Helix 65	AH2	G	19	27	Right-handed alpha
Helix 66	AH3	G	30	37	Right-handed 310
Helix 67	AH4	G	38	53	Right-handed alpha
Helix 68	AH5	G	65	69	Right-handed 310
Helix 69	AH6	G	70	90	Right-handed alpha
Helix 70	AH7	G	107	114	Right-handed 310
Helix 71	AH8	G	133	143	Right-handed alpha
Helix 72	AH9	G	148	154	Right-handed alpha
Helix 73	AI1	G	194	198	Right-handed 310
Helix 74	AI2	G	199	212	Right-handed alpha
Helix 75	AI3	H	19	27	Right-handed alpha
Helix 76	AI4	H	30	37	Right-handed 310
Helix 77	AI5	H	38	53	Right-handed alpha
Helix 78	AI6	H	65	69	Right-handed 310
Helix 79	AI7	H	70	89	Right-handed alpha
Helix 80	AI8	H	107	114	Right-handed 310
Helix 81	AI9	H	133	140	Right-handed alpha
Helix 82	AJ1	H	141	142	Right-handed 310
Helix 83	AJ2	H	150	155	Right-handed 310
Helix 84	AJ3	H	194	198	Right-handed 310
Helix 85	AJ4	H	199	213	Right-handed alpha

There are 8 sheets in PDB entry 7CAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	93	98	anti-parallel
Strand 3	A	125	132	parallel
Strand 4	A	56	63	parallel
Strand 5	A	12	17	parallel
Strand 6	A	165	169	parallel
Strand 7	A	187	190	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	125	132	parallel
Strand 4	B	56	63	parallel
Strand 5	B	12	16	parallel
Strand 6	B	165	168	parallel
Strand 7	B	187	190	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	98	first strand
Strand 2	C	125	132	parallel
Strand 3	C	56	63	parallel
Strand 4	C	12	16	parallel
Strand 5	C	165	168	parallel
Strand 6	C	187	190	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	119	first strand
Strand 2	D	93	98	anti-parallel
Strand 3	D	125	132	parallel
Strand 4	D	56	63	parallel
Strand 5	D	12	16	parallel
Strand 6	D	165	168	parallel
Strand 7	D	187	190	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	119	first strand
Strand 2	E	93	98	anti-parallel
Strand 3	E	125	132	parallel
Strand 4	E	56	63	parallel
Strand 5	E	12	17	parallel
Strand 6	E	165	169	parallel
Strand 7	E	187	190	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	119	first strand
Strand 2	F	93	98	anti-parallel
Strand 3	F	125	132	parallel
Strand 4	F	56	63	parallel
Strand 5	F	12	17	parallel
Strand 6	F	165	169	parallel
Strand 7	F	187	190	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	117	119	first strand
Strand 2	G	93	98	anti-parallel
Strand 3	G	125	132	parallel
Strand 4	G	56	63	parallel
Strand 5	G	12	16	parallel
Strand 6	G	165	168	parallel
Strand 7	G	187	190	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	119	first strand
Strand 2	H	93	98	anti-parallel
Strand 3	H	125	132	parallel
Strand 4	H	56	63	parallel
Strand 5	H	12	16	parallel
Strand 6	H	165	168	parallel
Strand 7	H	187	190	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CAV