Analysis of interatomic Contacts of Structural Units in PDB entry:
7CB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CB1 entry

There are 2 chains in PDB entry 7CB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3VAL 498
B
 THR 3VAL 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7CB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
32 36Right-handed 310
Helix 3
AA3
A
37 44Right-handed alpha
Helix 4
AA4
A
67 81Right-handed alpha
Helix 5
AA5
A
82 85Right-handed 310
Helix 6
AA6
A
96 101Right-handed alpha
Helix 7
AA7
A
106 114Right-handed alpha
Helix 8
AA8
A
116 135Right-handed alpha
Helix 9
AA9
A
147 149Right-handed 310
Helix 10
AB1
A
150 172Right-handed alpha
Helix 11
AB2
A
188 193Right-handed alpha
Helix 12
AB3
A
194 197Right-handed 310
Helix 13
AB4
A
198 204Right-handed alpha
Helix 14
AB5
A
241 246Right-handed 310
Helix 15
AB6
A
251 259Right-handed alpha
Helix 16
AB7
A
266 276Right-handed alpha
Helix 17
AB8
A
281 283Right-handed 310
Helix 18
AB9
A
329 334Right-handed alpha
Helix 19
AC1
A
342 351Right-handed alpha
Helix 20
AC2
A
381 395Right-handed alpha
Helix 21
AC3
A
404 408Right-handed 310
Helix 22
AC4
A
412 424Right-handed alpha
Helix 23
AC5
A
444 448Right-handed 310
Helix 24
AC6
B
14 20Right-handed alpha
Helix 25
AC7
B
32 36Right-handed 310
Helix 26
AC8
B
37 44Right-handed alpha
Helix 27
AC9
B
67 80Right-handed alpha
Helix 28
AD1
B
81 84Right-handed 310
Helix 29
AD2
B
96 101Right-handed alpha
Helix 30
AD3
B
106 114Right-handed alpha
Helix 31
AD4
B
116 135Right-handed alpha
Helix 32
AD5
B
147 149Right-handed 310
Helix 33
AD6
B
150 172Right-handed alpha
Helix 34
AD7
B
188 193Right-handed alpha
Helix 35
AD8
B
194 197Right-handed 310
Helix 36
AD9
B
198 204Right-handed alpha
Helix 37
AE1
B
241 246Right-handed 310
Helix 38
AE2
B
251 259Right-handed alpha
Helix 39
AE3
B
266 276Right-handed alpha
Helix 40
AE4
B
281 283Right-handed 310
Helix 41
AE5
B
328 335Right-handed alpha
Helix 42
AE6
B
342 350Right-handed alpha
Helix 43
AE7
B
381 395Right-handed alpha
Helix 44
AE8
B
404 408Right-handed 310
Helix 45
AE9
B
412 424Right-handed alpha
Helix 46
AF1
B
444 448Right-handed 310
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There are 6 sheets in PDB entry 7CB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
46 54anti-parallel
Strand 3
A
89 95parallel
Strand 4
A
138 142parallel
Strand 5
A
180 186parallel
Strand 6
A
208 212parallel
Strand 7
A
285 290parallel
Strand 8
A
399 403parallel
Strand 9
A
6 12parallel
Strand 10
A
46 54parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
375 378anti-parallel
Strand 4
A
365 370anti-parallel
Strand 5
A
355 360anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 470first strand
Strand 2
A
473 477anti-parallel
Strand 3
A
492 497anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
46 54anti-parallel
Strand 3
B
89 95parallel
Strand 4
B
138 142parallel
Strand 5
B
180 186parallel
Strand 6
B
208 212parallel
Strand 7
B
285 290parallel
Strand 8
B
399 403parallel
Strand 9
B
6 12parallel
Strand 10
B
46 54parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
292 296anti-parallel
Strand 3
B
375 378anti-parallel
Strand 4
B
365 370anti-parallel
Strand 5
B
355 360anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 470first strand
Strand 2
B
473 477anti-parallel
Strand 3
B
492 497anti-parallel
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