Analysis of interatomic Contacts of Structural Units in PDB entry:
7CB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CB6 entry

There are 3 chains in PDB entry 7CB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 466
B
 MET 1ILE 466
C
 THR 2TYR 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 7CB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
55 62Right-handed alpha
Helix 4
AA4
A
76 87Right-handed alpha
Helix 5
AA5
A
88 90Right-handed 310
Helix 6
AA6
A
103 116Right-handed alpha
Helix 7
AA7
A
128 136Right-handed alpha
Helix 8
AA8
A
144 159Right-handed alpha
Helix 9
AA9
A
176 206Right-handed alpha
Helix 10
AB1
A
210 223Right-handed alpha
Helix 11
AB2
A
228 238Right-handed alpha
Helix 12
AB3
A
247 251Right-handed 310
Helix 13
AB4
A
261 273Right-handed alpha
Helix 14
AB5
A
276 291Right-handed alpha
Helix 15
AB6
A
291 300Right-handed alpha
Helix 16
AB7
A
312 346Right-handed alpha
Helix 17
AB8
A
351 355Right-handed 310
Helix 18
AB9
A
358 362Right-handed 310
Helix 19
AC1
A
367 380Right-handed alpha
Helix 20
AC2
A
385 388Right-handed 310
Helix 21
AC3
A
389 414Right-handed alpha
Helix 22
AC4
A
417 431Right-handed alpha
Helix 23
AC5
A
436 449Right-handed alpha
Helix 24
AC6
B
11 24Right-handed alpha
Helix 25
AC7
B
34 45Right-handed alpha
Helix 26
AC8
B
55 62Right-handed alpha
Helix 27
AC9
B
76 87Right-handed alpha
Helix 28
AD1
B
88 90Right-handed 310
Helix 29
AD2
B
103 116Right-handed alpha
Helix 30
AD3
B
128 136Right-handed alpha
Helix 31
AD4
B
144 159Right-handed alpha
Helix 32
AD5
B
176 206Right-handed alpha
Helix 33
AD6
B
210 223Right-handed alpha
Helix 34
AD7
B
228 238Right-handed alpha
Helix 35
AD8
B
247 251Right-handed 310
Helix 36
AD9
B
261 273Right-handed alpha
Helix 37
AE1
B
276 291Right-handed alpha
Helix 38
AE2
B
291 300Right-handed alpha
Helix 39
AE3
B
312 346Right-handed alpha
Helix 40
AE4
B
351 355Right-handed 310
Helix 41
AE5
B
358 362Right-handed 310
Helix 42
AE6
B
367 380Right-handed alpha
Helix 43
AE7
B
385 388Right-handed 310
Helix 44
AE8
B
389 414Right-handed alpha
Helix 45
AE9
B
417 431Right-handed alpha
Helix 46
AF1
B
436 448Right-handed alpha
Helix 47
AF2
C
11 24Right-handed alpha
Helix 48
AF3
C
34 44Right-handed alpha
Helix 49
AF4
C
55 62Right-handed alpha
Helix 50
AF5
C
76 87Right-handed alpha
Helix 51
AF6
C
88 90Right-handed 310
Helix 52
AF7
C
103 116Right-handed alpha
Helix 53
AF8
C
128 136Right-handed alpha
Helix 54
AF9
C
144 159Right-handed alpha
Helix 55
AG1
C
176 206Right-handed alpha
Helix 56
AG2
C
210 223Right-handed alpha
Helix 57
AG3
C
228 238Right-handed alpha
Helix 58
AG4
C
247 252Right-handed 310
Helix 59
AG5
C
259 273Right-handed alpha
Helix 60
AG6
C
276 291Right-handed alpha
Helix 61
AG7
C
291 300Right-handed alpha
Helix 62
AG8
C
312 346Right-handed alpha
Helix 63
AG9
C
351 355Right-handed 310
Helix 64
AH1
C
358 362Right-handed 310
Helix 65
AH2
C
367 380Right-handed alpha
Helix 66
AH3
C
385 388Right-handed 310
Helix 67
AH4
C
389 414Right-handed alpha
Helix 68
AH5
C
417 431Right-handed alpha
Helix 69
AH6
C
436 448Right-handed alpha
Helix 70
AH7
D
11 24Right-handed alpha
Helix 71
AH8
D
34 44Right-handed alpha
Helix 72
AH9
D
55 62Right-handed alpha
Helix 73
AI1
D
76 87Right-handed alpha
Helix 74
AI2
D
88 90Right-handed 310
Helix 75
AI3
D
103 116Right-handed alpha
Helix 76
AI4
D
128 136Right-handed alpha
Helix 77
AI5
D
144 159Right-handed alpha
Helix 78
AI6
D
176 206Right-handed alpha
Helix 79
AI7
D
210 222Right-handed alpha
Helix 80
AI8
D
228 238Right-handed alpha
Helix 81
AI9
D
247 252Right-handed 310
Helix 82
AJ1
D
260 273Right-handed alpha
Helix 83
AJ2
D
276 291Right-handed alpha
Helix 84
AJ3
D
291 300Right-handed alpha
Helix 85
AJ4
D
312 347Right-handed alpha
Helix 86
AJ5
D
351 355Right-handed 310
Helix 87
AJ6
D
358 363Right-handed alpha
Helix 88
AJ7
D
367 380Right-handed alpha
Helix 89
AJ8
D
385 388Right-handed 310
Helix 90
AJ9
D
389 413Right-handed alpha
Helix 91
AK1
D
417 431Right-handed alpha
Helix 92
AK2
D
436 449Right-handed alpha
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There are 6 sheets in PDB entry 7CB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
28 31parallel
Strand 3
A
5 8parallel
Strand 4
A
68 71parallel
Strand 5
A
95 98parallel
Strand 6
A
120 127parallel
Strand 7
A
138 142anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 453first strand
Strand 2
A
460 461anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
28 31parallel
Strand 3
B
5 8parallel
Strand 4
B
68 71parallel
Strand 5
B
95 98parallel
Strand 6
B
120 127parallel
Strand 7
B
138 143anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 453first strand
Strand 2
B
460 461anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 52first strand
Strand 2
C
28 31parallel
Strand 3
C
5 8parallel
Strand 4
C
68 71parallel
Strand 5
C
95 98parallel
Strand 6
C
120 127parallel
Strand 7
C
138 143anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 52first strand
Strand 2
D
28 31parallel
Strand 3
D
5 8parallel
Strand 4
D
68 71parallel
Strand 5
D
95 98parallel
Strand 6
D
120 127parallel
Strand 7
D
138 142anti-parallel
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