Analysis of interatomic Contacts of Structural Units in PDB entry:
7CB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CB8 entry

There are 2 chains in PDB entry 7CB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ALA 399
B
 PRO 3ALA 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7CB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 31Right-handed alpha
Helix 2
AA2
A
50 69Right-handed alpha
Helix 3
AA3
A
77 94Right-handed alpha
Helix 4
AA4
A
99 108Right-handed alpha
Helix 5
AA5
A
113 132Right-handed alpha
Helix 6
AA6
A
140 153Right-handed alpha
Helix 7
AA7
A
158 162Right-handed 310
Helix 8
AA8
A
188 190Right-handed 310
Helix 9
AA9
A
191 203Right-handed alpha
Helix 10
AB1
A
209 225Right-handed alpha
Helix 11
AB2
A
230 246Right-handed alpha
Helix 12
AB3
A
256 263Right-handed alpha
Helix 13
AB4
A
263 276Right-handed alpha
Helix 14
AB5
A
279 316Right-handed alpha
Helix 15
AB6
A
322 331Right-handed alpha
Helix 16
AB7
A
339 346Right-handed alpha
Helix 17
AB8
A
349 363Right-handed alpha
Helix 18
AB9
A
381 397Right-handed alpha
Helix 19
AC1
B
25 31Right-handed alpha
Helix 20
AC2
B
50 69Right-handed alpha
Helix 21
AC3
B
77 94Right-handed alpha
Helix 22
AC4
B
99 108Right-handed alpha
Helix 23
AC5
B
113 132Right-handed alpha
Helix 24
AC6
B
140 153Right-handed alpha
Helix 25
AC7
B
188 190Right-handed 310
Helix 26
AC8
B
191 205Right-handed alpha
Helix 27
AC9
B
209 225Right-handed alpha
Helix 28
AD1
B
230 246Right-handed alpha
Helix 29
AD2
B
256 263Right-handed alpha
Helix 30
AD3
B
263 276Right-handed alpha
Helix 31
AD4
B
279 316Right-handed alpha
Helix 32
AD5
B
322 331Right-handed alpha
Helix 33
AD6
B
339 346Right-handed alpha
Helix 34
AD7
B
352 363Right-handed alpha
Helix 35
AD8
B
381 397Right-handed alpha
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There are 4 sheets in PDB entry 7CB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
33 38anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
377 380anti-parallel
Strand 3
A
366 368anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
33 38anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 338first strand
Strand 2
B
377 380anti-parallel
Strand 3
B
366 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il