Analysis of interatomic Contacts of Structural Units in PDB entry:
7CBA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CBA entry

There are 2 chains in PDB entry 7CBA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 66	ASN 850
B	ASP 67	SER 851

There are 73 helices in PDB entry 7CBA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	74	Right-handed 310
Helix 2	AA2	A	79	83	Right-handed 310
Helix 3	AA3	A	99	103	Right-handed 310
Helix 4	AA4	A	108	113	Right-handed alpha
Helix 5	AA5	A	150	158	Right-handed alpha
Helix 6	AA6	A	161	171	Right-handed alpha
Helix 7	AA7	A	184	195	Right-handed alpha
Helix 8	AA8	A	197	202	Right-handed alpha
Helix 9	AA9	A	222	230	Right-handed 310
Helix 10	AB1	A	234	242	Right-handed alpha
Helix 11	AB2	A	257	261	Right-handed 310
Helix 12	AB3	A	274	286	Right-handed alpha
Helix 13	AB4	A	304	312	Right-handed alpha
Helix 14	AB5	A	315	339	Right-handed alpha
Helix 15	AB6	A	359	361	Right-handed 310
Helix 16	AB7	A	367	369	Right-handed 310
Helix 17	AB8	A	398	406	Right-handed alpha
Helix 18	AB9	A	421	423	Right-handed 310
Helix 19	AC1	A	424	428	Right-handed 310
Helix 20	AC2	A	468	472	Right-handed 310
Helix 21	AC3	A	495	504	Right-handed alpha
Helix 22	AC4	A	518	522	Right-handed 310
Helix 23	AC5	A	561	568	Right-handed alpha
Helix 24	AC6	A	572	584	Right-handed alpha
Helix 25	AC7	A	648	652	Right-handed 310
Helix 26	AC8	A	654	658	Right-handed 310
Helix 27	AC9	A	671	675	Right-handed 310
Helix 28	AD1	A	678	683	Right-handed alpha
Helix 29	AD2	A	686	688	Right-handed 310
Helix 30	AD3	A	695	707	Right-handed alpha
Helix 31	AD4	A	707	717	Right-handed alpha
Helix 32	AD5	A	737	741	Right-handed 310
Helix 33	AD6	A	774	776	Right-handed 310
Helix 34	AD7	A	804	810	Right-handed alpha
Helix 35	AD8	A	815	824	Right-handed alpha
Helix 36	AD9	A	834	844	Right-handed alpha
Helix 37	AE1	B	70	74	Right-handed 310
Helix 38	AE2	B	79	83	Right-handed 310
Helix 39	AE3	B	108	113	Right-handed alpha
Helix 40	AE4	B	150	158	Right-handed alpha
Helix 41	AE5	B	161	171	Right-handed alpha
Helix 42	AE6	B	184	195	Right-handed alpha
Helix 43	AE7	B	197	202	Right-handed alpha
Helix 44	AE8	B	222	230	Right-handed 310
Helix 45	AE9	B	234	242	Right-handed alpha
Helix 46	AF1	B	257	261	Right-handed 310
Helix 47	AF2	B	274	286	Right-handed alpha
Helix 48	AF3	B	304	312	Right-handed alpha
Helix 49	AF4	B	315	339	Right-handed alpha
Helix 50	AF5	B	359	361	Right-handed 310
Helix 51	AF6	B	367	369	Right-handed 310
Helix 52	AF7	B	398	405	Right-handed alpha
Helix 53	AF8	B	421	423	Right-handed 310
Helix 54	AF9	B	424	428	Right-handed 310
Helix 55	AG1	B	468	472	Right-handed 310
Helix 56	AG2	B	495	504	Right-handed alpha
Helix 57	AG3	B	518	522	Right-handed 310
Helix 58	AG4	B	561	567	Right-handed alpha
Helix 59	AG5	B	568	570	Right-handed 310
Helix 60	AG6	B	572	584	Right-handed alpha
Helix 61	AG7	B	648	652	Right-handed 310
Helix 62	AG8	B	654	659	Right-handed 310
Helix 63	AG9	B	671	675	Right-handed 310
Helix 64	AH1	B	677	685	Right-handed 310
Helix 65	AH2	B	686	688	Right-handed 310
Helix 66	AH3	B	695	707	Right-handed alpha
Helix 67	AH4	B	707	717	Right-handed alpha
Helix 68	AH5	B	737	741	Right-handed 310
Helix 69	AH6	B	774	776	Right-handed 310
Helix 70	AH7	B	791	795	Right-handed 310
Helix 71	AH8	B	804	811	Right-handed alpha
Helix 72	AH9	B	815	824	Right-handed alpha
Helix 73	AI1	B	834	844	Right-handed alpha

There are 18 sheets in PDB entry 7CBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	246	249	parallel
Strand 3	A	296	301	parallel
Strand 4	A	141	146	parallel
Strand 5	A	346	350	parallel
Strand 6	A	475	478	anti-parallel
Strand 7	A	172	174	anti-parallel
Strand 8	A	486	488	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	491	492	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	215	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	459	461	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	447	449	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	378	first strand
Strand 2	A	384	387	anti-parallel
Strand 3	A	438	442	anti-parallel
Strand 4	A	415	419	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	591	first strand
Strand 2	A	825	826	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	601	first strand
Strand 2	A	605	610	anti-parallel
Strand 3	A	615	623	anti-parallel
Strand 4	A	719	726	anti-parallel
Strand 5	A	755	763	anti-parallel
Strand 6	A	778	786	anti-parallel
Strand 7	A	813	814	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	668	first strand
Strand 2	A	690	694	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	266	first strand
Strand 2	B	246	249	parallel
Strand 3	B	296	301	parallel
Strand 4	B	141	146	parallel
Strand 5	B	346	350	parallel
Strand 6	B	475	478	anti-parallel
Strand 7	B	172	174	anti-parallel
Strand 8	B	486	488	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	491	492	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	215	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	460	461	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	447	449	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	378	first strand
Strand 2	B	384	387	anti-parallel
Strand 3	B	438	442	anti-parallel
Strand 4	B	415	419	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	591	first strand
Strand 2	B	825	826	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	601	first strand
Strand 2	B	605	610	anti-parallel
Strand 3	B	615	623	anti-parallel
Strand 4	B	719	726	anti-parallel
Strand 5	B	755	763	anti-parallel
Strand 6	B	778	786	anti-parallel
Strand 7	B	813	814	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	668	first strand
Strand 2	B	690	694	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CBA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CBA