Analysis of interatomic Contacts of Structural Units in PDB entry:
7CBB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CBB entry

There are 2 chains in PDB entry 7CBB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	TYR 583
B	GLN 2	TYR 583

There are 57 helices in PDB entry 7CBB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	26	Right-handed alpha
Helix 2	AA2	A	27	30	Right-handed 310
Helix 3	AA3	A	86	97	Right-handed alpha
Helix 4	AA4	A	98	103	Right-handed alpha
Helix 5	AA5	A	106	127	Right-handed alpha
Helix 6	AA6	A	133	146	Right-handed alpha
Helix 7	AA7	A	160	168	Right-handed alpha
Helix 8	AA8	A	169	172	Right-handed 310
Helix 9	AA9	A	194	203	Right-handed alpha
Helix 10	AB1	A	205	215	Right-handed alpha
Helix 11	AB2	A	219	221	Right-handed 310
Helix 12	AB3	A	229	236	Right-handed alpha
Helix 13	AB4	A	236	241	Right-handed alpha
Helix 14	AB5	A	241	247	Right-handed alpha
Helix 15	AB6	A	295	316	Right-handed alpha
Helix 16	AB7	A	316	322	Right-handed alpha
Helix 17	AB8	A	343	348	Right-handed 310
Helix 18	AB9	A	357	362	Right-handed alpha
Helix 19	AC1	A	372	376	Right-handed 310
Helix 20	AC2	A	379	387	Right-handed alpha
Helix 21	AC3	A	392	416	Right-handed alpha
Helix 22	AC4	A	444	448	Right-handed 310
Helix 23	AC5	A	451	458	Right-handed alpha
Helix 24	AC6	A	479	491	Right-handed alpha
Helix 25	AC7	A	494	508	Right-handed alpha
Helix 26	AC8	A	510	529	Right-handed alpha
Helix 27	AC9	A	535	544	Right-handed alpha
Helix 28	AD1	A	554	561	Right-handed alpha
Helix 29	AD2	B	3	26	Right-handed alpha
Helix 30	AD3	B	27	30	Right-handed 310
Helix 31	AD4	B	86	97	Right-handed alpha
Helix 32	AD5	B	98	103	Right-handed alpha
Helix 33	AD6	B	106	127	Right-handed alpha
Helix 34	AD7	B	133	146	Right-handed alpha
Helix 35	AD8	B	160	168	Right-handed alpha
Helix 36	AD9	B	169	172	Right-handed 310
Helix 37	AE1	B	194	202	Right-handed alpha
Helix 38	AE2	B	205	215	Right-handed alpha
Helix 39	AE3	B	219	221	Right-handed 310
Helix 40	AE4	B	229	236	Right-handed alpha
Helix 41	AE5	B	236	241	Right-handed alpha
Helix 42	AE6	B	241	247	Right-handed alpha
Helix 43	AE7	B	295	316	Right-handed alpha
Helix 44	AE8	B	316	322	Right-handed alpha
Helix 45	AE9	B	343	348	Right-handed 310
Helix 46	AF1	B	357	362	Right-handed alpha
Helix 47	AF2	B	372	376	Right-handed 310
Helix 48	AF3	B	379	387	Right-handed alpha
Helix 49	AF4	B	392	416	Right-handed alpha
Helix 50	AF5	B	444	448	Right-handed 310
Helix 51	AF6	B	452	458	Right-handed alpha
Helix 52	AF7	B	479	491	Right-handed alpha
Helix 53	AF8	B	494	508	Right-handed alpha
Helix 54	AF9	B	510	529	Right-handed alpha
Helix 55	AG1	B	532	534	Right-handed 310
Helix 56	AG2	B	535	545	Right-handed alpha
Helix 57	AG3	B	555	560	Right-handed alpha

There are 14 sheets in PDB entry 7CBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	52	60	anti-parallel
Strand 4	A	66	68	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	52	60	anti-parallel
Strand 4	A	75	76	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	286	287	anti-parallel
Strand 3	A	290	291	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	189	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	350	355	anti-parallel
Strand 4	A	274	280	anti-parallel
Strand 5	A	268	271	anti-parallel
Strand 6	A	250	262	anti-parallel
Strand 7	A	175	183	anti-parallel
Strand 8	A	223	228	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	436	442	parallel
Strand 3	A	428	433	anti-parallel
Strand 4	A	367	370	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	449	450	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	552	first strand
Strand 2	A	573	577	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	42	49	anti-parallel
Strand 3	B	52	60	anti-parallel
Strand 4	B	66	68	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	42	49	anti-parallel
Strand 3	B	52	60	anti-parallel
Strand 4	B	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	286	287	anti-parallel
Strand 3	B	290	291	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	350	355	anti-parallel
Strand 4	B	277	280	anti-parallel
Strand 5	B	268	271	anti-parallel
Strand 6	B	250	262	anti-parallel
Strand 7	B	175	183	anti-parallel
Strand 8	B	223	228	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	325	first strand
Strand 2	B	436	442	parallel
Strand 3	B	428	433	anti-parallel
Strand 4	B	367	370	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	449	451	anti-parallel
Strand 3	B	476	477	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	551	first strand
Strand 2	B	574	577	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CBB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CBB