Analysis of interatomic Contacts of Structural Units in PDB entry:
7CBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CBD entry

There is 1 chain in PDB entry 7CBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1THR 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7CBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
55 59Right-handed 310
Helix 4
AA4
A
67 83Right-handed alpha
Helix 5
AA5
A
112 123Right-handed alpha
Helix 6
AA6
A
123 132Right-handed alpha
Helix 7
AA7
A
133 137Right-handed 310
Helix 8
AA8
A
151 156Right-handed alpha
Helix 9
AA9
A
159 182Right-handed alpha
Helix 10
AB1
A
194 199Right-handed alpha
Helix 11
AB2
A
200 218Right-handed alpha
Helix 12
AB3
A
220 225Right-handed 310
Helix 13
AB4
A
256 258Right-handed 310
Helix 14
AB5
A
268 283Right-handed alpha
Helix 15
AB6
A
314 323Right-handed alpha
Helix 16
AB7
A
352 355Right-handed 310
Helix 17
AB8
A
385 389Right-handed 310
Helix 18
AB9
A
415 425Right-handed alpha
Helix 19
AC1
A
435 440Right-handed 310
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There are 4 sheets in PDB entry 7CBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
86 92parallel
Strand 3
A
51 53parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
86 92parallel
Strand 3
A
140 145parallel
Strand 4
A
186 191parallel
Strand 5
A
227 230parallel
Strand 6
A
290 294parallel
Strand 7
A
357 361parallel
Strand 8
A
346 347anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
253 254anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
400 401anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il