Analysis of interatomic Contacts of Structural Units in PDB entry:
7CBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CBF entry

There are 2 chains in PDB entry 7CBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 13LEU 395
B
 ARG 15ALA 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7CBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 45Right-handed alpha
Helix 2
AA2
A
50 64Right-handed alpha
Helix 3
AA3
A
74 81Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
91 119Right-handed alpha
Helix 6
AA6
A
121 125Right-handed 310
Helix 7
AA7
A
140 150Right-handed alpha
Helix 8
AA8
A
163 165Right-handed 310
Helix 9
AA9
A
166 182Right-handed alpha
Helix 10
AB1
A
207 214Right-handed alpha
Helix 11
AB2
A
271 289Right-handed alpha
Helix 12
AB3
A
290 292Right-handed 310
Helix 13
AB4
A
295 299Right-handed 310
Helix 14
AB5
A
307 319Right-handed alpha
Helix 15
AB6
A
321 336Right-handed alpha
Helix 16
AB7
A
338 340Right-handed 310
Helix 17
AB8
A
341 357Right-handed alpha
Helix 18
AB9
A
389 394Right-handed alpha
Helix 19
AC1
B
36 45Right-handed alpha
Helix 20
AC2
B
50 64Right-handed alpha
Helix 21
AC3
B
74 81Right-handed alpha
Helix 22
AC4
B
82 86Right-handed 310
Helix 23
AC5
B
91 119Right-handed alpha
Helix 24
AC6
B
121 125Right-handed 310
Helix 25
AC7
B
140 149Right-handed alpha
Helix 26
AC8
B
163 165Right-handed 310
Helix 27
AC9
B
166 182Right-handed alpha
Helix 28
AD1
B
194 198Right-handed 310
Helix 29
AD2
B
207 214Right-handed alpha
Helix 30
AD3
B
271 289Right-handed alpha
Helix 31
AD4
B
290 292Right-handed 310
Helix 32
AD5
B
295 299Right-handed 310
Helix 33
AD6
B
307 319Right-handed alpha
Helix 34
AD7
B
321 336Right-handed alpha
Helix 35
AD8
B
338 340Right-handed 310
Helix 36
AD9
B
341 357Right-handed alpha
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There are 6 sheets in PDB entry 7CBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 161first strand
Strand 2
A
127 132parallel
Strand 3
A
187 193parallel
Strand 4
A
219 226anti-parallel
Strand 5
A
19 26anti-parallel
Strand 6
A
238 247anti-parallel
Strand 7
A
379 386anti-parallel
Strand 8
A
368 375anti-parallel
Strand 9
A
300 303parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
68 71anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
B
255 260anti-parallel
Strand 3
B
263 268anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
255 260anti-parallel
Strand 3
B
137 138anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 161first strand
Strand 2
B
127 132parallel
Strand 3
B
186 193parallel
Strand 4
B
219 226anti-parallel
Strand 5
B
19 26anti-parallel
Strand 6
B
238 247anti-parallel
Strand 7
B
379 387anti-parallel
Strand 8
B
368 375anti-parallel
Strand 9
B
300 303parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
68 70anti-parallel
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