Analysis of interatomic Contacts of Structural Units in PDB entry:
7CBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CBO entry

There is 1 chain in PDB entry 7CBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 27ARG 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7CBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 73Right-handed alpha
Helix 2
AA2
A
92 95Right-handed 310
Helix 3
AA3
A
114 127Right-handed alpha
Helix 4
AA4
A
165 179Right-handed alpha
Helix 5
AA5
A
202 207Right-handed alpha
Helix 6
AA6
A
233 246Right-handed alpha
Helix 7
AA7
A
261 268Right-handed alpha
Helix 8
AA8
A
269 272Right-handed 310
Helix 9
AA9
A
297 315Right-handed alpha
Helix 10
AB1
A
330 335Right-handed alpha
Helix 11
AB2
A
336 346Right-handed alpha
Helix 12
AB3
A
350 369Right-handed alpha
Helix 13
AB4
A
378 381Right-handed 310
Helix 14
AB5
A
398 407Right-handed alpha
Helix 15
AB6
A
432 436Right-handed 310
Helix 16
AB7
A
444 450Right-handed alpha
Helix 17
AB8
A
459 464Right-handed 310
Helix 18
AB9
A
480 489Right-handed alpha
Helix 19
AC1
A
490 501Right-handed alpha
Helix 20
AC2
A
502 506Right-handed 310
Helix 21
AC3
A
507 525Right-handed alpha
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There are 6 sheets in PDB entry 7CBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
141 146anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
108 112anti-parallel
Strand 5
A
86 90parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
137 139anti-parallel
Strand 3
A
130 131anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
77 80parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 158first strand
Strand 2
A
183 187parallel
Strand 3
A
250 257parallel
Strand 4
A
320 324parallel
Strand 5
A
372 376parallel
Strand 6
A
389 392parallel
Strand 7
A
411 413parallel
Strand 8
A
466 473parallel
Strand 9
A
152 158parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
228 229anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
219 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il