Analysis of interatomic Contacts of Structural Units in PDB entry:
7CCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CCC entry

There are 6 chains in PDB entry 7CCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 72
A	GLY 74	VAL 370
B	MET 1	PRO 342
C	VAL 8	SER 276
D	SER 2	PHE 249
E	THR 5	VAL 54

There are 71 helices in PDB entry 7CCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	197	Right-handed alpha
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	252	257	Right-handed alpha
Helix 11	AB2	A	258	262	Right-handed 310
Helix 12	AB3	A	263	268	Right-handed 310
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	286	295	Right-handed alpha
Helix 15	AB6	A	301	305	Right-handed 310
Helix 16	AB7	A	308	321	Right-handed alpha
Helix 17	AB8	A	334	336	Right-handed 310
Helix 18	AB9	A	337	349	Right-handed alpha
Helix 19	AC1	A	349	356	Right-handed alpha
Helix 20	AC2	A	359	366	Right-handed alpha
Helix 21	AC3	B	10	21	Right-handed alpha
Helix 22	AC4	B	48	58	Right-handed alpha
Helix 23	AC5	B	59	61	Right-handed 310
Helix 24	AC6	B	94	104	Right-handed alpha
Helix 25	AC7	B	104	113	Right-handed alpha
Helix 26	AC8	B	125	130	Right-handed alpha
Helix 27	AC9	B	130	142	Right-handed alpha
Helix 28	AD1	B	148	167	Right-handed alpha
Helix 29	AD2	B	170	174	Right-handed 310
Helix 30	AD3	B	183	195	Right-handed alpha
Helix 31	AD4	B	224	229	Right-handed 310
Helix 32	AD5	B	265	287	Right-handed alpha
Helix 33	AD6	B	299	303	Right-handed 310
Helix 34	AD7	B	304	313	Right-handed alpha
Helix 35	AD8	C	9	23	Right-handed alpha
Helix 36	AD9	C	28	41	Right-handed alpha
Helix 37	AE1	C	42	50	Right-handed alpha
Helix 38	AE2	C	50	61	Right-handed alpha
Helix 39	AE3	C	117	136	Right-handed alpha
Helix 40	AE4	C	220	253	Right-handed alpha
Helix 41	AE5	C	253	259	Right-handed alpha
Helix 42	AE6	C	270	275	Right-handed alpha
Helix 43	AE7	D	3	16	Right-handed alpha
Helix 44	AE8	D	17	19	Right-handed 310
Helix 45	AE9	D	20	32	Right-handed alpha
Helix 46	AF1	D	35	43	Right-handed alpha
Helix 47	AF2	D	90	112	Right-handed alpha
Helix 48	AF3	D	208	231	Right-handed alpha
Helix 49	AF4	D	231	244	Right-handed alpha
Helix 50	AF5	E	55	61	Right-handed alpha
Helix 51	AF6	E	71	75	Right-handed 310
Helix 52	AF7	E	78	92	Right-handed alpha
Helix 53	AF8	E	97	101	Right-handed 310
Helix 54	AF9	E	112	125	Right-handed alpha
Helix 55	AG1	E	137	144	Right-handed alpha
Helix 56	AG2	E	172	175	Right-handed 310
Helix 57	AG3	E	181	197	Right-handed alpha
Helix 58	AG4	E	202	217	Right-handed alpha
Helix 59	AG5	E	222	233	Right-handed alpha
Helix 60	AG6	E	251	256	Right-handed 310
Helix 61	AG7	E	257	262	Right-handed 310
Helix 62	AG8	E	263	268	Right-handed 310
Helix 63	AG9	E	273	283	Right-handed alpha
Helix 64	AH1	E	289	296	Right-handed alpha
Helix 65	AH2	E	301	305	Right-handed 310
Helix 66	AH3	E	308	321	Right-handed alpha
Helix 67	AH4	E	334	336	Right-handed 310
Helix 68	AH5	E	337	348	Right-handed alpha
Helix 69	AH6	E	349	354	Right-handed alpha
Helix 70	AH7	E	359	366	Right-handed alpha
Helix 71	AH8	E	367	370	Right-handed 310

There are 17 sheets in PDB entry 7CCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	43	first strand
Strand 2	B	27	33	anti-parallel
Strand 3	B	67	76	anti-parallel
Strand 4	B	81	88	anti-parallel
Strand 5	B	117	123	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	216	first strand
Strand 2	B	200	206	anti-parallel
Strand 3	B	235	245	anti-parallel
Strand 4	B	248	258	anti-parallel
Strand 5	B	291	297	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	74	75	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	104	110	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	148	first strand
Strand 2	C	151	164	anti-parallel
Strand 3	C	169	180	anti-parallel
Strand 4	C	186	198	anti-parallel
Strand 5	C	202	216	anti-parallel
Strand 6	D	185	202	anti-parallel
Strand 7	D	164	181	anti-parallel
Strand 8	D	145	158	anti-parallel
Strand 9	D	128	137	anti-parallel
Strand 10	D	116	123	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	58	61	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	70	72	anti-parallel
Strand 3	D	79	80	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	35	37	anti-parallel
Strand 3	E	66	68	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	176	178	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	299	parallel
Strand 5	E	329	330	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CCC