Analysis of interatomic Contacts of Structural Units in PDB entry:
7CCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CCD entry

There are 8 chains in PDB entry 7CCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2HIS 170
E
 C 1 C 10
F
 G 1 G 4
F
 A 6 G 10
B
 PRO 2GLY 165
C
 C 1 C 10
D
 G 1 G 4
D
 A 6 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7CCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
30 45Right-handed alpha
Helix 3
AA3
A
52 68Right-handed alpha
Helix 4
AA4
A
76 86Right-handed alpha
Helix 5
AA5
A
104 115Right-handed alpha
Helix 6
AA6
A
121 131Right-handed alpha
Helix 7
AA7
A
131 147Right-handed alpha
Helix 8
AA8
A
152 159Right-handed alpha
Helix 9
AA9
A
161 166Right-handed alpha
Helix 10
AB1
B
4 18Right-handed alpha
Helix 11
AB2
B
30 45Right-handed alpha
Helix 12
AB3
B
52 68Right-handed alpha
Helix 13
AB4
B
76 86Right-handed alpha
Helix 14
AB5
B
104 115Right-handed alpha
Helix 15
AB6
B
121 131Right-handed alpha
Helix 16
AB7
B
131 148Right-handed alpha
Helix 17
AB8
B
152 159Right-handed alpha
Helix 18
AB9
B
161 165Right-handed 310
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There are 4 sheets in PDB entry 7CCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
27 28anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
117 120anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
27 28anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 92first strand
Strand 2
B
117 120anti-parallel
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