Analysis of interatomic Contacts of Structural Units in PDB entry:
7CCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CCF entry

There is 1 chain in PDB entry 7CCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24ALA 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7CCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
63 73Right-handed alpha
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
114 125Right-handed alpha
Helix 6
AA6
A
128 135Right-handed alpha
Helix 7
AA7
A
135 151Right-handed alpha
Helix 8
AA8
A
160 164Right-handed alpha
Helix 9
AA9
A
167 178Right-handed alpha
Helix 10
AB1
A
183 200Right-handed alpha
Helix 11
AB2
A
206 232Right-handed alpha
Helix 12
AB3
A
235 246Right-handed alpha
Helix 13
AB4
A
251 266Right-handed alpha
Helix 14
AB5
A
267 283Right-handed alpha
Helix 15
AB6
A
284 294Right-handed alpha
Helix 16
AB7
A
297 309Right-handed alpha
Helix 17
AB8
A
340 344Right-handed alpha
Helix 18
AB9
A
362 366Right-handed 310
Helix 19
AC1
A
378 397Right-handed alpha
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There are 3 sheets in PDB entry 7CCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
58 61anti-parallel
Strand 3
A
335 339parallel
Strand 4
A
314 319anti-parallel
Strand 5
A
77 78anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
423 425anti-parallel
Strand 3
A
401 402anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
328 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il