Analysis of interatomic Contacts of Structural Units in PDB entry:
7CCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CCJ entry

There are 8 chains in PDB entry 7CCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4TYR 162
E
 G 1 C 8
F
 G 1 G 4
F
 T 6 C 8
B
 THR 4GLU 164
C
 G 1 C 8
D
 G 1 G 4
D
 T 6 C 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7CCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
30 45Right-handed alpha
Helix 3
AA3
A
52 68Right-handed alpha
Helix 4
AA4
A
76 86Right-handed alpha
Helix 5
AA5
A
104 115Right-handed alpha
Helix 6
AA6
A
121 131Right-handed alpha
Helix 7
AA7
A
131 147Right-handed alpha
Helix 8
AA8
A
152 158Right-handed alpha
Helix 9
AA9
B
5 18Right-handed alpha
Helix 10
AB1
B
30 45Right-handed alpha
Helix 11
AB2
B
52 68Right-handed alpha
Helix 12
AB3
B
76 86Right-handed alpha
Helix 13
AB4
B
104 115Right-handed alpha
Helix 14
AB5
B
121 131Right-handed alpha
Helix 15
AB6
B
131 146Right-handed alpha
Helix 16
AB7
B
152 158Right-handed alpha
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There are 2 sheets in PDB entry 7CCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
117 120anti-parallel
Strand 3
A
89 92anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
117 120anti-parallel
Strand 3
B
89 92anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il