Analysis of interatomic Contacts of Structural Units in PDB entry:
7CCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CCS entry

There are 2 chains in PDB entry 7CCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 163ALA 631
B
 THR 45GLU 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 7CCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 172Right-handed alpha
Helix 2
AA2
A
176 207Right-handed alpha
Helix 3
AA3
A
230 236Right-handed alpha
Helix 4
AA4
A
241 256Right-handed alpha
Helix 5
AA5
A
287 301Right-handed alpha
Helix 6
AA6
A
324 342Right-handed alpha
Helix 7
AA7
A
350 354Right-handed 310
Helix 8
AA8
A
356 372Right-handed alpha
Helix 9
AA9
A
385 396Right-handed alpha
Helix 10
AB1
A
404 408Right-handed alpha
Helix 11
AB2
A
412 428Right-handed alpha
Helix 12
AB3
A
441 446Right-handed alpha
Helix 13
AB4
A
447 460Right-handed alpha
Helix 14
AB5
A
470 474Right-handed 310
Helix 15
AB6
A
476 480Right-handed 310
Helix 16
AB7
A
509 516Right-handed alpha
Helix 17
AB8
A
519 534Right-handed alpha
Helix 18
AB9
A
534 539Right-handed alpha
Helix 19
AC1
A
580 584Right-handed 310
Helix 20
AC2
A
585 589Right-handed 310
Helix 21
AC3
A
613 615Right-handed 310
Helix 22
AC4
B
46 55Right-handed alpha
Helix 23
AC5
B
64 71Right-handed alpha
Helix 24
AC6
B
76 104Right-handed alpha
Helix 25
AC7
B
111 119Right-handed alpha
Helix 26
AC8
B
121 133Right-handed alpha
Helix 27
AC9
B
133 152Right-handed alpha
Helix 28
AD1
B
153 155Right-handed 310
Helix 29
AD2
B
163 182Right-handed alpha
Helix 30
AD3
B
184 202Right-handed alpha
Helix 31
AD4
B
202 216Right-handed alpha
Helix 32
AD5
B
216 221Right-handed alpha
Helix 33
AD6
B
235 246Right-handed alpha
Helix 34
AD7
B
248 259Right-handed alpha
Helix 35
AD8
B
262 264Right-handed 310
Helix 36
AD9
B
265 291Right-handed alpha
Helix 37
AE1
B
295 299Right-handed 310
Helix 38
AE2
B
302 310Right-handed alpha
Helix 39
AE3
B
314 319Right-handed alpha
Helix 40
AE4
B
321 349Right-handed alpha
Helix 41
AE5
B
365 383Right-handed alpha
Helix 42
AE6
B
384 413Right-handed alpha
Helix 43
AE7
B
425 446Right-handed alpha
Helix 44
AE8
B
448 459Right-handed alpha
Helix 45
AE9
B
460 468Right-handed alpha
Helix 46
AF1
B
474 493Right-handed alpha
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There are 4 sheets in PDB entry 7CCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 307first strand
Strand 2
A
259 262parallel
Strand 3
A
225 227parallel
Strand 4
A
464 468parallel
Strand 5
A
433 434parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
376 381parallel
Strand 3
A
400 403parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 544first strand
Strand 2
A
551 558anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
621 627anti-parallel
Strand 5
A
593 598anti-parallel
Strand 6
A
609 611anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 359first strand
Strand 2
B
494 495anti-parallel
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