Analysis of interatomic Contacts of Structural Units in PDB entry:
7CD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CD5 entry

There are 2 chains in PDB entry 7CD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 C 1 C 8
A
 GLY 40LEU 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7CD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 77Right-handed alpha
Helix 2
AA2
A
78 87Right-handed alpha
Helix 3
AA3
A
99 103Right-handed 310
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
147 151Right-handed 310
Helix 6
AA6
A
175 179Right-handed 310
Helix 7
AA7
A
180 202Right-handed alpha
Helix 8
AA8
A
215 219Right-handed 310
Helix 9
AA9
A
222 226Right-handed 310
Helix 10
AB1
A
232 246Right-handed alpha
Helix 11
AB2
A
251 256Right-handed alpha
Helix 12
AB3
A
268 272Right-handed 310
Helix 13
AB4
A
289 292Right-handed 310
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There are 2 sheets in PDB entry 7CD5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
90 94anti-parallel
Strand 4
A
61 67parallel
Strand 5
A
311 315anti-parallel
Strand 6
A
294 299anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
165 170anti-parallel
Strand 4
A
204 209parallel
Strand 5
A
282 287anti-parallel
Strand 6
A
248 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il