Analysis of interatomic Contacts of Structural Units in PDB entry:
7CDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CDH entry

There is 1 chain in PDB entry 7CDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1GLU 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 7CDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
72 76Right-handed 310
Helix 2
AA2
X
81 87Right-handed alpha
Helix 3
AA3
X
105 119Right-handed alpha
Helix 4
AA4
X
140 148Right-handed alpha
Helix 5
AA5
X
168 187Right-handed alpha
Helix 6
AA6
X
203 213Right-handed alpha
Helix 7
AA7
X
216 218Right-handed 310
Helix 8
AA8
X
228 241Right-handed alpha
Helix 9
AA9
X
263 274Right-handed alpha
Helix 10
AB1
X
276 278Right-handed 310
Helix 11
AB2
X
308 319Right-handed alpha
Helix 12
AB3
X
323 328Right-handed alpha
Helix 13
AB4
X
329 331Right-handed 310
Helix 14
AB5
X
332 340Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7CDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
27 31first strand
Strand 2
X
15 23anti-parallel
Strand 3
X
2 11anti-parallel
Strand 4
X
43 47parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
27 31first strand
Strand 2
X
15 23anti-parallel
Strand 3
X
2 11anti-parallel
Strand 4
X
51 55parallel
Strand 5
X
354 358anti-parallel
Strand 6
X
364 369anti-parallel
Strand 7
X
372 376anti-parallel
Strand 8
X
379 380anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
57 62first strand
Strand 2
X
90 95parallel
Strand 3
X
122 127parallel
Strand 4
X
151 159parallel
Strand 5
X
191 196parallel
Strand 6
X
220 223parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
245 248first strand
Strand 2
X
280 283parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il