Analysis of interatomic Contacts of Structural Units in PDB entry:
7CDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CDJ entry

There are 3 chains in PDB entry 7CDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 THR 333GLY 526
H
 GLN 1GLU 218
L
 ASP -1GLU 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7CDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
337 343Right-handed alpha
Helix 2
AA2
E
351 353Right-handed 310
Helix 3
AA3
E
364 370Right-handed alpha
Helix 4
AA4
E
405 410Right-handed 310
Helix 5
AA5
E
416 422Right-handed alpha
Helix 6
AA6
E
438 443Right-handed alpha
Helix 7
AA7
E
502 505Right-handed 310
Helix 8
AA8
H
28 32Right-handed 310
Helix 9
AA9
H
191 195Right-handed 310
Helix 10
AB1
L
181 186Right-handed alpha
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There are 15 sheets in PDB entry 7CDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
348 349first strand
Strand 2
E
394 403parallel
Strand 3
E
354 358anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
348 349first strand
Strand 2
E
394 403parallel
Strand 3
E
507 516anti-parallel
Strand 4
E
431 437anti-parallel
Strand 5
E
376 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
361 362first strand
Strand 2
E
524 525parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 8first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
79 83anti-parallel
Strand 4
H
68 72anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
46 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
92 98anti-parallel
Strand 5
H
108 109anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
46 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
92 98anti-parallel
Strand 5
H
113 115anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
142 151anti-parallel
Strand 3
H
182 190anti-parallel
Strand 4
H
169 171anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
142 151anti-parallel
Strand 3
H
182 190anti-parallel
Strand 4
H
175 176anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
158 160first strand
Strand 2
H
200 206anti-parallel
Strand 3
H
211 217anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
2 5first strand
Strand 2
L
17 23anti-parallel
Strand 3
L
68 73anti-parallel
Strand 4
L
60 64anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
8 12first strand
Strand 2
L
100 105parallel
Strand 3
L
83 88anti-parallel
Strand 4
L
31 36anti-parallel
Strand 5
L
43 47anti-parallel
Strand 6
L
51 52anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
8 12first strand
Strand 2
L
100 105parallel
Strand 3
L
83 88anti-parallel
Strand 4
L
95 96anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
112 116first strand
Strand 2
L
127 137anti-parallel
Strand 3
L
171 180anti-parallel
Strand 4
L
157 161anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
143 148first strand
Strand 2
L
189 195anti-parallel
Strand 3
L
203 208anti-parallel
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