Analysis of interatomic Contacts of Structural Units in PDB entry:
7CDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CDV entry

There are 2 chains in PDB entry 7CDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 73LYS 349
B
 THR 74LYS 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7CDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 106Right-handed alpha
Helix 2
AA2
A
119 122Right-handed 310
Helix 3
AA3
A
123 134Right-handed alpha
Helix 4
AA4
A
148 157Right-handed alpha
Helix 5
AA5
A
179 194Right-handed alpha
Helix 6
AA6
A
208 225Right-handed alpha
Helix 7
AA7
A
240 254Right-handed alpha
Helix 8
AA8
A
265 278Right-handed alpha
Helix 9
AA9
A
311 328Right-handed alpha
Helix 10
AB1
A
331 334Right-handed 310
Helix 11
AB2
B
93 106Right-handed alpha
Helix 12
AB3
B
119 122Right-handed 310
Helix 13
AB4
B
123 134Right-handed alpha
Helix 14
AB5
B
148 157Right-handed alpha
Helix 15
AB6
B
179 194Right-handed alpha
Helix 16
AB7
B
208 225Right-handed alpha
Helix 17
AB8
B
240 253Right-handed alpha
Helix 18
AB9
B
265 278Right-handed alpha
Helix 19
AC1
B
311 328Right-handed alpha
Helix 20
AC2
B
331 334Right-handed 310
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There are 3 sheets in PDB entry 7CDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 339first strand
Strand 2
A
174 178parallel
Strand 3
A
161 164parallel
Strand 4
A
138 142parallel
Strand 5
A
79 85parallel
Strand 6
A
111 117parallel
Strand 7
B
111 117anti-parallel
Strand 8
B
79 85parallel
Strand 9
B
138 142parallel
Strand 10
B
161 164parallel
Strand 11
B
174 178parallel
Strand 12
B
336 339parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
198 202parallel
Strand 3
A
260 263parallel
Strand 4
A
288 293parallel
Strand 5
A
306 309parallel
Strand 6
A
342 343anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
198 202parallel
Strand 3
B
260 263parallel
Strand 4
B
288 293parallel
Strand 5
B
306 309parallel
Strand 6
B
342 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il