Analysis of interatomic Contacts of Structural Units in PDB entry:
7CDW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CDW entry

There is 1 chain in PDB entry 7CDW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	LYS 669

There are 37 helices in PDB entry 7CDW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	25	40	Right-handed alpha
Helix 3	AA3	A	93	102	Right-handed alpha
Helix 4	AA4	A	116	129	Right-handed alpha
Helix 5	AA5	A	146	159	Right-handed alpha
Helix 6	AA6	A	171	175	Right-handed 310
Helix 7	AA7	A	205	207	Right-handed 310
Helix 8	AA8	A	208	227	Right-handed alpha
Helix 9	AA9	A	227	236	Right-handed alpha
Helix 10	AB1	A	241	255	Right-handed alpha
Helix 11	AB2	A	271	283	Right-handed alpha
Helix 12	AB3	A	421	439	Right-handed alpha
Helix 13	AB4	A	459	473	Right-handed alpha
Helix 14	AB5	A	542	544	Right-handed 310
Helix 15	AB6	A	545	558	Right-handed alpha
Helix 16	AB7	A	585	603	Right-handed alpha
Helix 17	AB8	A	620	634	Right-handed alpha
Helix 18	AB9	A	657	659	Right-handed 310
Helix 19	AC1	A	661	670	Right-handed alpha
Helix 20	AC2	A	687	701	Right-handed alpha
Helix 21	AC3	B	9	11	Right-handed 310
Helix 22	AC4	B	25	40	Right-handed alpha
Helix 23	AC5	B	91	102	Right-handed alpha
Helix 24	AC6	B	116	129	Right-handed alpha
Helix 25	AC7	B	146	159	Right-handed alpha
Helix 26	AC8	B	171	175	Right-handed 310
Helix 27	AC9	B	205	227	Right-handed alpha
Helix 28	AD1	B	227	236	Right-handed alpha
Helix 29	AD2	B	241	255	Right-handed alpha
Helix 30	AD3	B	271	283	Right-handed alpha
Helix 31	AD4	B	459	473	Right-handed alpha
Helix 32	AD5	B	545	559	Right-handed alpha
Helix 33	AD6	B	585	603	Right-handed alpha
Helix 34	AD7	B	623	634	Right-handed alpha
Helix 35	AD8	B	657	659	Right-handed 310
Helix 36	AD9	B	661	670	Right-handed alpha
Helix 37	AE1	B	687	700	Right-handed alpha

There are 20 sheets in PDB entry 7CDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	75	first strand
Strand 2	A	78	83	anti-parallel
Strand 3	A	13	20	parallel
Strand 4	A	104	110	parallel
Strand 5	A	133	138	parallel
Strand 6	A	259	263	parallel
Strand 7	A	162	164	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	177	180	anti-parallel
Strand 3	A	185	188	anti-parallel
Strand 4	A	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	295	first strand
Strand 2	A	303	306	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	393	395	anti-parallel
Strand 4	A	315	324	anti-parallel
Strand 5	A	328	337	anti-parallel
Strand 6	A	379	382	anti-parallel
Strand 7	A	360	363	anti-parallel
Strand 8	A	368	371	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	373	375	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	447	first strand
Strand 2	A	452	457	anti-parallel
Strand 3	A	413	419	anti-parallel
Strand 4	A	478	480	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	447	first strand
Strand 2	A	452	457	anti-parallel
Strand 3	A	413	419	anti-parallel
Strand 4	A	484	485	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	491	first strand
Strand 2	A	606	619	anti-parallel
Strand 3	A	647	655	anti-parallel
Strand 4	A	637	644	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	491	first strand
Strand 2	A	606	619	anti-parallel
Strand 3	A	675	685	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	504	first strand
Strand 2	A	511	521	anti-parallel
Strand 3	A	570	578	anti-parallel
Strand 4	A	530	534	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	75	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	13	20	parallel
Strand 4	B	104	110	parallel
Strand 5	B	133	138	parallel
Strand 6	B	259	263	parallel
Strand 7	B	162	164	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	177	180	anti-parallel
Strand 3	B	185	188	anti-parallel
Strand 4	B	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	296	first strand
Strand 2	B	299	306	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	393	395	anti-parallel
Strand 4	B	315	324	anti-parallel
Strand 5	B	328	337	anti-parallel
Strand 6	B	378	382	anti-parallel
Strand 7	B	360	363	anti-parallel
Strand 8	B	368	371	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	373	375	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	446	first strand
Strand 2	B	453	457	anti-parallel
Strand 3	B	413	419	anti-parallel
Strand 4	B	478	480	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	446	first strand
Strand 2	B	453	457	anti-parallel
Strand 3	B	413	419	anti-parallel
Strand 4	B	484	485	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	606	619	anti-parallel
Strand 3	B	647	655	anti-parallel
Strand 4	B	637	644	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	606	619	anti-parallel
Strand 3	B	675	685	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	505	first strand
Strand 2	B	510	521	anti-parallel
Strand 3	B	570	578	anti-parallel
Strand 4	B	530	534	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CDW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CDW