Analysis of interatomic Contacts of Structural Units in PDB entry:
7CDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CDY entry

There are 2 chains in PDB entry 7CDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2SER 347
B
 PRO 2SER 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7CDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 75Right-handed alpha
Helix 2
AA2
A
86 88Right-handed 310
Helix 3
AA3
A
146 152Right-handed 310
Helix 4
AA4
A
278 282Right-handed 310
Helix 5
AA5
B
70 75Right-handed alpha
Helix 6
AA6
B
146 152Right-handed 310
Helix 7
AA7
B
278 282Right-handed 310
Helix 8
AA8
B
312 316Right-handed 310
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There are 12 sheets in PDB entry 7CDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 11first strand
Strand 2
A
339 345anti-parallel
Strand 3
A
330 334anti-parallel
Strand 4
A
319 324anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 19first strand
Strand 2
A
26 30anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
43 44anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
76 84anti-parallel
Strand 3
A
90 99anti-parallel
Strand 4
A
106 114anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
137 140anti-parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
185 187anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 198first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
216 219anti-parallel
Strand 4
A
259 261anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 273first strand
Strand 2
A
284 289anti-parallel
Strand 3
A
294 301anti-parallel
Strand 4
A
304 311anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 11first strand
Strand 2
B
339 345anti-parallel
Strand 3
B
330 334anti-parallel
Strand 4
B
319 324anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
26 30anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
43 44anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
76 84anti-parallel
Strand 3
B
90 99anti-parallel
Strand 4
B
106 114anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
137 140anti-parallel
Strand 3
B
160 163anti-parallel
Strand 4
B
185 187anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 198first strand
Strand 2
B
205 210anti-parallel
Strand 3
B
216 219anti-parallel
Strand 4
B
259 261anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 273first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 301anti-parallel
Strand 4
B
304 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il