Analysis of interatomic Contacts of Structural Units in PDB entry:
7CEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CEE entry

There are 2 chains in PDB entry 7CEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38ASN 610
B
 ALA 38ASN 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 7CEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 80Right-handed 310
Helix 2
AA2
A
117 122Right-handed alpha
Helix 3
AA3
A
123 132Right-handed alpha
Helix 4
AA4
A
192 196Right-handed 310
Helix 5
AA5
A
198 206Right-handed alpha
Helix 6
AA6
A
216 222Right-handed alpha
Helix 7
AA7
A
232 249Right-handed alpha
Helix 8
AA8
A
250 252Right-handed 310
Helix 9
AA9
A
265 276Right-handed alpha
Helix 10
AB1
A
303 315Right-handed alpha
Helix 11
AB2
A
321 332Right-handed alpha
Helix 12
AB3
A
333 340Right-handed alpha
Helix 13
AB4
A
363 371Right-handed alpha
Helix 14
AB5
A
372 376Right-handed 310
Helix 15
AB6
A
387 395Right-handed 310
Helix 16
AB7
A
402 419Right-handed alpha
Helix 17
AB8
A
423 435Right-handed alpha
Helix 18
AB9
A
443 460Right-handed alpha
Helix 19
AC1
A
460 472Right-handed alpha
Helix 20
AC2
A
503 508Right-handed alpha
Helix 21
AC3
A
509 513Right-handed 310
Helix 22
AC4
A
524 545Right-handed alpha
Helix 23
AC5
A
594 603Right-handed alpha
Helix 24
AC6
A
603 609Right-handed alpha
Helix 25
AC7
B
76 80Right-handed 310
Helix 26
AC8
B
117 122Right-handed alpha
Helix 27
AC9
B
123 132Right-handed alpha
Helix 28
AD1
B
192 196Right-handed 310
Helix 29
AD2
B
198 206Right-handed alpha
Helix 30
AD3
B
216 222Right-handed alpha
Helix 31
AD4
B
232 249Right-handed alpha
Helix 32
AD5
B
250 252Right-handed 310
Helix 33
AD6
B
265 276Right-handed alpha
Helix 34
AD7
B
303 315Right-handed alpha
Helix 35
AD8
B
321 332Right-handed alpha
Helix 36
AD9
B
333 340Right-handed alpha
Helix 37
AE1
B
363 371Right-handed alpha
Helix 38
AE2
B
372 376Right-handed 310
Helix 39
AE3
B
387 392Right-handed alpha
Helix 40
AE4
B
393 395Right-handed 310
Helix 41
AE5
B
402 419Right-handed alpha
Helix 42
AE6
B
423 435Right-handed alpha
Helix 43
AE7
B
443 460Right-handed alpha
Helix 44
AE8
B
460 472Right-handed alpha
Helix 45
AE9
B
503 508Right-handed alpha
Helix 46
AF1
B
509 513Right-handed 310
Helix 47
AF2
B
524 545Right-handed alpha
Helix 48
AF3
B
594 603Right-handed alpha
Helix 49
AF4
B
603 609Right-handed alpha
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There are 4 sheets in PDB entry 7CEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
93 95parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
63 70anti-parallel
Strand 3
A
140 146anti-parallel
Strand 4
A
208 212anti-parallel
Strand 5
A
177 183parallel
Strand 6
A
254 264parallel
Strand 7
A
286 290parallel
Strand 8
A
377 383parallel
Strand 9
A
478 483parallel
Strand 10
A
579 583parallel
Strand 11
A
588 591anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
94 95parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
63 70anti-parallel
Strand 3
B
140 146anti-parallel
Strand 4
B
208 212anti-parallel
Strand 5
B
177 183parallel
Strand 6
B
254 264parallel
Strand 7
B
286 290parallel
Strand 8
B
377 383parallel
Strand 9
B
478 483parallel
Strand 10
B
579 583parallel
Strand 11
B
588 591anti-parallel
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