Analysis of interatomic Contacts of Structural Units in PDB entry:
7CF6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CF6 entry

There are 4 chains in PDB entry 7CF6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLU 386
A	MET -3	GLU 386
C	SER 0	GLU 386
D	MET 1	GLU 386

There are 52 helices in PDB entry 7CF6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	72	76	Right-handed 310
Helix 2	AA2	B	81	88	Right-handed alpha
Helix 3	AA3	B	105	119	Right-handed alpha
Helix 4	AA4	B	140	148	Right-handed alpha
Helix 5	AA5	B	168	187	Right-handed alpha
Helix 6	AA6	B	203	213	Right-handed alpha
Helix 7	AA7	B	216	218	Right-handed 310
Helix 8	AA8	B	228	241	Right-handed alpha
Helix 9	AA9	B	263	274	Right-handed alpha
Helix 10	AB1	B	276	278	Right-handed 310
Helix 11	AB2	B	308	319	Right-handed alpha
Helix 12	AB3	B	323	328	Right-handed alpha
Helix 13	AB4	B	329	331	Right-handed 310
Helix 14	AB5	B	332	340	Right-handed alpha
Helix 15	AB6	A	72	76	Right-handed 310
Helix 16	AB7	A	81	88	Right-handed alpha
Helix 17	AB8	A	105	118	Right-handed alpha
Helix 18	AB9	A	140	148	Right-handed alpha
Helix 19	AC1	A	168	187	Right-handed alpha
Helix 20	AC2	A	203	213	Right-handed alpha
Helix 21	AC3	A	216	218	Right-handed 310
Helix 22	AC4	A	228	240	Right-handed alpha
Helix 23	AC5	A	263	274	Right-handed alpha
Helix 24	AC6	A	276	278	Right-handed 310
Helix 25	AC7	A	308	319	Right-handed alpha
Helix 26	AC8	A	323	328	Right-handed alpha
Helix 27	AC9	A	329	331	Right-handed 310
Helix 28	AD1	A	332	340	Right-handed alpha
Helix 29	AD2	C	72	76	Right-handed 310
Helix 30	AD3	C	81	88	Right-handed alpha
Helix 31	AD4	C	105	118	Right-handed alpha
Helix 32	AD5	C	140	148	Right-handed alpha
Helix 33	AD6	C	168	187	Right-handed alpha
Helix 34	AD7	C	203	213	Right-handed alpha
Helix 35	AD8	C	228	240	Right-handed alpha
Helix 36	AD9	C	263	274	Right-handed alpha
Helix 37	AE1	C	276	278	Right-handed 310
Helix 38	AE2	C	308	319	Right-handed alpha
Helix 39	AE3	C	323	328	Right-handed alpha
Helix 40	AE4	C	329	331	Right-handed 310
Helix 41	AE5	C	332	339	Right-handed alpha
Helix 42	AE6	D	81	88	Right-handed alpha
Helix 43	AE7	D	105	119	Right-handed alpha
Helix 44	AE8	D	140	148	Right-handed alpha
Helix 45	AE9	D	168	187	Right-handed alpha
Helix 46	AF1	D	203	213	Right-handed alpha
Helix 47	AF2	D	216	218	Right-handed 310
Helix 48	AF3	D	228	241	Right-handed alpha
Helix 49	AF4	D	263	274	Right-handed alpha
Helix 50	AF5	D	276	280	Right-handed 310
Helix 51	AF6	D	308	319	Right-handed alpha
Helix 52	AF7	D	332	339	Right-handed alpha

There are 20 sheets in PDB entry 7CF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	15	23	anti-parallel
Strand 3	B	2	11	anti-parallel
Strand 4	B	43	47	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	15	23	anti-parallel
Strand 3	B	2	11	anti-parallel
Strand 4	B	51	55	parallel
Strand 5	B	354	358	anti-parallel
Strand 6	B	364	369	anti-parallel
Strand 7	B	372	376	anti-parallel
Strand 8	B	379	380	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	90	95	parallel
Strand 3	B	122	127	parallel
Strand 4	B	151	159	parallel
Strand 5	B	191	196	parallel
Strand 6	B	220	223	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	248	first strand
Strand 2	B	280	283	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	293	first strand
Strand 2	B	299	304	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	15	23	anti-parallel
Strand 3	A	3	11	anti-parallel
Strand 4	A	44	47	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	15	23	anti-parallel
Strand 3	A	3	11	anti-parallel
Strand 4	A	51	55	parallel
Strand 5	A	354	358	anti-parallel
Strand 6	A	364	369	anti-parallel
Strand 7	A	372	376	anti-parallel
Strand 8	A	379	380	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	90	95	parallel
Strand 3	A	122	127	parallel
Strand 4	A	151	159	parallel
Strand 5	A	191	196	parallel
Strand 6	A	220	223	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	248	first strand
Strand 2	A	280	283	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	293	first strand
Strand 2	A	299	304	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	15	23	anti-parallel
Strand 3	C	3	11	anti-parallel
Strand 4	C	44	47	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	15	23	anti-parallel
Strand 3	C	3	11	anti-parallel
Strand 4	C	51	55	parallel
Strand 5	C	354	358	anti-parallel
Strand 6	C	364	369	anti-parallel
Strand 7	C	372	376	anti-parallel
Strand 8	C	379	380	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	62	first strand
Strand 2	C	90	95	parallel
Strand 3	C	122	127	parallel
Strand 4	C	151	159	parallel
Strand 5	C	191	196	parallel
Strand 6	C	220	223	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	248	first strand
Strand 2	C	280	283	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	21	23	anti-parallel
Strand 3	D	3	6	anti-parallel
Strand 4	D	44	47	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	55	first strand
Strand 2	D	353	358	anti-parallel
Strand 3	D	364	369	anti-parallel
Strand 4	D	372	376	anti-parallel
Strand 5	D	379	380	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	62	first strand
Strand 2	D	90	95	parallel
Strand 3	D	122	125	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	159	first strand
Strand 2	D	191	196	parallel
Strand 3	D	220	223	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	248	first strand
Strand 2	D	282	283	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	293	first strand
Strand 2	D	299	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CF6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CF6