Analysis of interatomic Contacts of Structural Units in PDB entry:
7CF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CF8 entry

There are 6 chains in PDB entry 7CF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 292
B
 ALA 2ALA 289
C
 ALA 2ASP 292
D
 MET 1ALA 291
E
 ALA 2ASP 292
F
 MET 1GLY 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 7CF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 38Right-handed alpha
Helix 2
AA2
A
51 64Right-handed alpha
Helix 3
AA3
A
124 137Right-handed alpha
Helix 4
AA4
A
155 169Right-handed alpha
Helix 5
AA5
A
177 184Right-handed alpha
Helix 6
AA6
A
188 199Right-handed alpha
Helix 7
AA7
A
209 211Right-handed 310
Helix 8
AA8
A
233 252Right-handed alpha
Helix 9
AA9
A
256 258Right-handed 310
Helix 10
AB1
A
259 265Right-handed alpha
Helix 11
AB2
A
267 291Right-handed alpha
Helix 12
AB3
B
26 38Right-handed alpha
Helix 13
AB4
B
51 65Right-handed alpha
Helix 14
AB5
B
118 121Right-handed 310
Helix 15
AB6
B
124 137Right-handed alpha
Helix 16
AB7
B
155 169Right-handed alpha
Helix 17
AB8
B
177 184Right-handed alpha
Helix 18
AB9
B
188 198Right-handed alpha
Helix 19
AC1
B
209 211Right-handed 310
Helix 20
AC2
B
234 252Right-handed alpha
Helix 21
AC3
B
256 258Right-handed 310
Helix 22
AC4
B
259 265Right-handed alpha
Helix 23
AC5
B
267 288Right-handed alpha
Helix 24
AC6
C
26 38Right-handed alpha
Helix 25
AC7
C
51 63Right-handed alpha
Helix 26
AC8
C
118 121Right-handed 310
Helix 27
AC9
C
124 137Right-handed alpha
Helix 28
AD1
C
155 169Right-handed alpha
Helix 29
AD2
C
177 184Right-handed alpha
Helix 30
AD3
C
188 199Right-handed alpha
Helix 31
AD4
C
209 211Right-handed 310
Helix 32
AD5
C
236 252Right-handed alpha
Helix 33
AD6
C
256 258Right-handed 310
Helix 34
AD7
C
259 265Right-handed alpha
Helix 35
AD8
C
267 290Right-handed alpha
Helix 36
AD9
D
26 38Right-handed alpha
Helix 37
AE1
D
51 65Right-handed alpha
Helix 38
AE2
D
118 121Right-handed 310
Helix 39
AE3
D
124 137Right-handed alpha
Helix 40
AE4
D
147 155Right-handed alpha
Helix 41
AE5
D
160 169Right-handed alpha
Helix 42
AE6
D
177 184Right-handed alpha
Helix 43
AE7
D
188 198Right-handed alpha
Helix 44
AE8
D
233 252Right-handed alpha
Helix 45
AE9
D
256 258Right-handed 310
Helix 46
AF1
D
259 265Right-handed alpha
Helix 47
AF2
D
267 291Right-handed alpha
Helix 48
AF3
E
26 38Right-handed alpha
Helix 49
AF4
E
51 65Right-handed alpha
Helix 50
AF5
E
117 122Right-handed alpha
Helix 51
AF6
E
124 137Right-handed alpha
Helix 52
AF7
E
155 168Right-handed alpha
Helix 53
AF8
E
177 184Right-handed alpha
Helix 54
AF9
E
188 198Right-handed alpha
Helix 55
AG1
E
209 211Right-handed 310
Helix 56
AG2
E
236 252Right-handed alpha
Helix 57
AG3
E
256 258Right-handed 310
Helix 58
AG4
E
259 265Right-handed alpha
Helix 59
AG5
E
267 292Right-handed alpha
Helix 60
AG6
F
26 38Right-handed alpha
Helix 61
AG7
F
53 65Right-handed alpha
Helix 62
AG8
F
118 121Right-handed 310
Helix 63
AG9
F
125 137Right-handed alpha
Helix 64
AH1
F
155 169Right-handed alpha
Helix 65
AH2
F
177 184Right-handed alpha
Helix 66
AH3
F
188 199Right-handed alpha
Helix 67
AH4
F
209 211Right-handed 310
Helix 68
AH5
F
235 252Right-handed alpha
Helix 69
AH6
F
256 258Right-handed 310
Helix 70
AH7
F
259 265Right-handed alpha
Helix 71
AH8
F
267 288Right-handed alpha
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There are 12 sheets in PDB entry 7CF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
42 45parallel
Strand 3
A
4 7parallel
Strand 4
A
112 116parallel
Strand 5
A
141 145parallel
Strand 6
A
172 176parallel
Strand 7
A
203 207parallel
Strand 8
A
213 217anti-parallel
Strand 9
A
220 224anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
11 15anti-parallel
Strand 3
A
80 82parallel
Strand 4
A
94 96anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
42 44parallel
Strand 3
B
4 6parallel
Strand 4
B
112 116parallel
Strand 5
B
141 145parallel
Strand 6
B
172 176parallel
Strand 7
B
203 207parallel
Strand 8
B
213 217anti-parallel
Strand 9
B
220 224anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
11 14anti-parallel
Strand 3
B
80 82parallel
Strand 4
B
94 96anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
41 45parallel
Strand 3
C
3 7parallel
Strand 4
C
112 116parallel
Strand 5
C
141 145parallel
Strand 6
C
172 176parallel
Strand 7
C
203 207parallel
Strand 8
C
213 217anti-parallel
Strand 9
C
220 224anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 25first strand
Strand 2
C
11 14anti-parallel
Strand 3
C
80 82parallel
Strand 4
C
94 96anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 68first strand
Strand 2
D
42 45parallel
Strand 3
D
4 7parallel
Strand 4
D
112 116parallel
Strand 5
D
141 145parallel
Strand 6
D
172 176parallel
Strand 7
D
203 207parallel
Strand 8
D
213 217anti-parallel
Strand 9
D
220 224anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 25first strand
Strand 2
D
11 15anti-parallel
Strand 3
D
80 83parallel
Strand 4
D
94 96anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
67 68first strand
Strand 2
E
41 45parallel
Strand 3
E
3 7parallel
Strand 4
E
112 116parallel
Strand 5
E
141 145parallel
Strand 6
E
172 176parallel
Strand 7
E
203 207parallel
Strand 8
E
213 217anti-parallel
Strand 9
E
220 224anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 25first strand
Strand 2
E
11 14anti-parallel
Strand 3
E
80 82parallel
Strand 4
E
94 96anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
67 68first strand
Strand 2
F
42 45parallel
Strand 3
F
4 7parallel
Strand 4
F
112 116parallel
Strand 5
F
141 145parallel
Strand 6
F
172 176parallel
Strand 7
F
203 207parallel
Strand 8
F
213 216anti-parallel
Strand 9
F
221 224anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 13first strand
Strand 2
F
23 25anti-parallel
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