Analysis of interatomic Contacts of Structural Units in PDB entry:
7CFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CFB entry

There are 2 chains in PDB entry 7CFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 287LYS 511
B
 ARG 287ASP 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7CFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
299 307Right-handed alpha
Helix 2
AA2
A
310 314Right-handed 310
Helix 3
AA3
A
340 342Right-handed 310
Helix 4
AA4
A
343 351Right-handed alpha
Helix 5
AA5
A
416 421Right-handed alpha
Helix 6
AA6
A
435 440Right-handed alpha
Helix 7
AA7
A
441 443Right-handed 310
Helix 8
AA8
A
484 499Right-handed alpha
Helix 9
AA9
A
502 507Right-handed alpha
Helix 10
AB1
B
299 307Right-handed alpha
Helix 11
AB2
B
310 314Right-handed 310
Helix 12
AB3
B
340 342Right-handed 310
Helix 13
AB4
B
343 351Right-handed alpha
Helix 14
AB5
B
416 421Right-handed alpha
Helix 15
AB6
B
435 443Right-handed 310
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There are 4 sheets in PDB entry 7CFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 327first strand
Strand 2
A
334 337anti-parallel
Strand 3
A
427 431anti-parallel
Strand 4
A
459 464parallel
Strand 5
A
446 454anti-parallel
Strand 6
A
319 327anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 359first strand
Strand 2
A
412 414anti-parallel
Strand 3
A
369 373anti-parallel
Strand 4
A
378 387anti-parallel
Strand 5
A
393 397anti-parallel
Strand 6
A
402 406anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 328first strand
Strand 2
B
333 337anti-parallel
Strand 3
B
427 431anti-parallel
Strand 4
B
459 463parallel
Strand 5
B
446 454anti-parallel
Strand 6
B
318 328anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 359first strand
Strand 2
B
412 413anti-parallel
Strand 3
B
369 373anti-parallel
Strand 4
B
378 387anti-parallel
Strand 5
B
393 396anti-parallel
Strand 6
B
403 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il