Analysis of interatomic Contacts of Structural Units in PDB entry:
7CFC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CFC entry

There are 9 chains in PDB entry 7CFC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 287	VAL 464
B	ARG 287	VAL 464
C	ARG 287	ILE 465
D	ARG 287	ILE 465
E	ARG 287	VAL 464
F	ARG 4	LYS 14
G	ARG 4	LYS 14
H	ARG 6	LEU 13
I	GLY 5	LYS 14

There are 30 helices in PDB entry 7CFC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	299	307	Right-handed alpha
Helix 2	AA2	A	310	314	Right-handed 310
Helix 3	AA3	A	340	342	Right-handed 310
Helix 4	AA4	A	343	351	Right-handed alpha
Helix 5	AA5	A	416	421	Right-handed alpha
Helix 6	AA6	A	435	443	Right-handed 310
Helix 7	AA7	B	299	307	Right-handed alpha
Helix 8	AA8	B	312	314	Right-handed 310
Helix 9	AA9	B	340	342	Right-handed 310
Helix 10	AB1	B	343	351	Right-handed alpha
Helix 11	AB2	B	416	421	Right-handed alpha
Helix 12	AB3	B	435	443	Right-handed 310
Helix 13	AB4	C	299	307	Right-handed alpha
Helix 14	AB5	C	310	314	Right-handed 310
Helix 15	AB6	C	343	351	Right-handed alpha
Helix 16	AB7	C	416	421	Right-handed alpha
Helix 17	AB8	C	435	443	Right-handed 310
Helix 18	AB9	D	299	307	Right-handed alpha
Helix 19	AC1	D	310	314	Right-handed 310
Helix 20	AC2	D	340	342	Right-handed 310
Helix 21	AC3	D	343	351	Right-handed alpha
Helix 22	AC4	D	416	421	Right-handed alpha
Helix 23	AC5	D	435	443	Right-handed 310
Helix 24	AC6	E	300	307	Right-handed alpha
Helix 25	AC7	E	435	443	Right-handed 310
Helix 26	AC8	F	6	14	Right-handed alpha
Helix 27	AC9	G	4	6	Right-handed 310
Helix 28	AD1	G	7	13	Right-handed alpha
Helix 29	AD2	H	7	13	Right-handed alpha
Helix 30	AD3	I	6	13	Right-handed alpha

There are 10 sheets in PDB entry 7CFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	328	first strand
Strand 2	A	333	337	anti-parallel
Strand 3	A	426	431	anti-parallel
Strand 4	A	459	464	parallel
Strand 5	A	446	454	anti-parallel
Strand 6	A	318	328	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	412	414	anti-parallel
Strand 3	A	368	373	anti-parallel
Strand 4	A	378	387	anti-parallel
Strand 5	A	393	396	anti-parallel
Strand 6	A	403	406	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	C	318	328	parallel
Strand 3	C	446	454	anti-parallel
Strand 4	C	459	463	anti-parallel
Strand 5	C	427	431	parallel
Strand 6	C	333	337	anti-parallel
Strand 7	C	318	328	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	328	first strand
Strand 2	B	333	337	anti-parallel
Strand 3	B	427	431	anti-parallel
Strand 4	B	459	463	parallel
Strand 5	B	446	454	anti-parallel
Strand 6	B	318	328	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	359	first strand
Strand 2	B	412	414	anti-parallel
Strand 3	B	368	373	anti-parallel
Strand 4	B	378	387	anti-parallel
Strand 5	B	393	396	anti-parallel
Strand 6	B	403	406	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	359	first strand
Strand 2	C	412	414	anti-parallel
Strand 3	C	368	373	anti-parallel
Strand 4	C	378	387	anti-parallel
Strand 5	C	393	396	anti-parallel
Strand 6	C	403	406	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	328	first strand
Strand 2	D	333	337	anti-parallel
Strand 3	D	427	431	anti-parallel
Strand 4	D	458	463	parallel
Strand 5	D	446	454	anti-parallel
Strand 6	D	318	328	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	359	first strand
Strand 2	D	412	414	anti-parallel
Strand 3	D	368	373	anti-parallel
Strand 4	D	378	387	anti-parallel
Strand 5	D	393	396	anti-parallel
Strand 6	D	403	406	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	318	328	first strand
Strand 2	E	333	337	anti-parallel
Strand 3	E	427	431	anti-parallel
Strand 4	E	459	463	parallel
Strand 5	E	446	454	anti-parallel
Strand 6	E	318	328	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	359	first strand
Strand 2	E	412	414	anti-parallel
Strand 3	E	368	373	anti-parallel
Strand 4	E	378	387	anti-parallel
Strand 5	E	393	396	anti-parallel
Strand 6	E	403	406	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CFC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CFC