Analysis of interatomic Contacts of Structural Units in PDB entry:
7CFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CFH entry

There are 2 chains in PDB entry 7CFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 186ASP 350
B
 THR 184THR 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7CFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
188 202Right-handed alpha
Helix 2
AA2
A
206 219Right-handed alpha
Helix 3
AA3
A
220 222Right-handed 310
Helix 4
AA4
A
223 228Right-handed alpha
Helix 5
AA5
A
232 234Right-handed 310
Helix 6
AA6
A
242 254Right-handed alpha
Helix 7
AA7
A
275 280Right-handed 310
Helix 8
AA8
A
284 289Right-handed alpha
Helix 9
AA9
A
290 294Right-handed 310
Helix 10
AB1
A
306 318Right-handed alpha
Helix 11
AB2
A
337 346Right-handed alpha
Helix 12
AB3
B
188 202Right-handed alpha
Helix 13
AB4
B
206 219Right-handed alpha
Helix 14
AB5
B
220 222Right-handed 310
Helix 15
AB6
B
223 227Right-handed 310
Helix 16
AB7
B
232 234Right-handed 310
Helix 17
AB8
B
242 254Right-handed alpha
Helix 18
AB9
B
275 280Right-handed 310
Helix 19
AC1
B
285 289Right-handed 310
Helix 20
AC2
B
290 295Right-handed 310
Helix 21
AC3
B
306 317Right-handed alpha
Helix 22
AC4
B
337 346Right-handed alpha
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There are 4 sheets in PDB entry 7CFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
331 336anti-parallel
Strand 3
A
321 325anti-parallel
Strand 4
A
300 302parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
257 261parallel
Strand 3
A
268 273anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
331 336anti-parallel
Strand 3
B
321 325anti-parallel
Strand 4
B
300 302parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
257 261parallel
Strand 3
B
268 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il