Analysis of interatomic Contacts of Structural Units in PDB entry:
7CFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CFJ entry

There are 2 chains in PDB entry 7CFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 89PHE 232
B
 ASN 89PHE 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7CFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 102Right-handed 310
Helix 2
AA2
A
112 119Right-handed alpha
Helix 3
AA3
A
148 154Right-handed 310
Helix 4
AA4
A
183 188Right-handed 310
Helix 5
AA5
A
225 230Right-handed alpha
Helix 6
AA6
B
99 102Right-handed 310
Helix 7
AA7
B
112 119Right-handed alpha
Helix 8
AA8
B
148 154Right-handed 310
Helix 9
AA9
B
183 188Right-handed 310
Helix 10
AB1
B
225 230Right-handed alpha
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There are 2 sheets in PDB entry 7CFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
120 122parallel
Strand 4
A
133 137anti-parallel
Strand 5
A
195 201parallel
Strand 6
A
210 223anti-parallel
Strand 7
A
167 180anti-parallel
Strand 8
A
159 163anti-parallel
Strand 9
A
94 98anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
120 122parallel
Strand 4
B
133 137anti-parallel
Strand 5
B
195 201parallel
Strand 6
B
210 223anti-parallel
Strand 7
B
167 180anti-parallel
Strand 8
B
159 163anti-parallel
Strand 9
B
94 98anti-parallel
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