Analysis of interatomic Contacts of Structural Units in PDB entry:
7CFS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CFS entry

There are 3 chains in PDB entry 7CFS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 40	LEU 465
B	SER 40	LEU 465
C	SER 40	LEU 465

There are 51 helices in PDB entry 7CFS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	61	Right-handed alpha
Helix 2	AA2	A	67	71	Right-handed 310
Helix 3	AA3	A	99	103	Right-handed 310
Helix 4	AA4	A	106	111	Right-handed alpha
Helix 5	AA5	A	133	140	Right-handed alpha
Helix 6	AA6	A	154	162	Right-handed alpha
Helix 7	AA7	A	164	169	Right-handed alpha
Helix 8	AA8	A	180	184	Right-handed 310
Helix 9	AA9	A	225	229	Right-handed 310
Helix 10	AB1	A	257	262	Right-handed alpha
Helix 11	AB2	A	310	323	Right-handed alpha
Helix 12	AB3	A	338	343	Right-handed alpha
Helix 13	AB4	A	346	352	Right-handed alpha
Helix 14	AB5	A	386	394	Right-handed alpha
Helix 15	AB6	A	397	404	Right-handed alpha
Helix 16	AB7	A	427	443	Right-handed alpha
Helix 17	AB8	A	446	462	Right-handed alpha
Helix 18	AB9	B	45	61	Right-handed alpha
Helix 19	AC1	B	67	71	Right-handed 310
Helix 20	AC2	B	99	103	Right-handed 310
Helix 21	AC3	B	106	111	Right-handed alpha
Helix 22	AC4	B	133	140	Right-handed alpha
Helix 23	AC5	B	154	162	Right-handed alpha
Helix 24	AC6	B	164	169	Right-handed alpha
Helix 25	AC7	B	180	184	Right-handed 310
Helix 26	AC8	B	225	229	Right-handed 310
Helix 27	AC9	B	257	262	Right-handed alpha
Helix 28	AD1	B	310	323	Right-handed alpha
Helix 29	AD2	B	338	343	Right-handed alpha
Helix 30	AD3	B	346	352	Right-handed alpha
Helix 31	AD4	B	386	394	Right-handed alpha
Helix 32	AD5	B	397	404	Right-handed alpha
Helix 33	AD6	B	427	443	Right-handed alpha
Helix 34	AD7	B	446	462	Right-handed alpha
Helix 35	AD8	C	45	61	Right-handed alpha
Helix 36	AD9	C	67	71	Right-handed 310
Helix 37	AE1	C	99	103	Right-handed 310
Helix 38	AE2	C	106	111	Right-handed alpha
Helix 39	AE3	C	133	140	Right-handed alpha
Helix 40	AE4	C	154	162	Right-handed alpha
Helix 41	AE5	C	164	169	Right-handed alpha
Helix 42	AE6	C	180	184	Right-handed 310
Helix 43	AE7	C	225	229	Right-handed 310
Helix 44	AE8	C	257	262	Right-handed alpha
Helix 45	AE9	C	310	323	Right-handed alpha
Helix 46	AF1	C	338	343	Right-handed alpha
Helix 47	AF2	C	346	352	Right-handed alpha
Helix 48	AF3	C	386	394	Right-handed alpha
Helix 49	AF4	C	397	404	Right-handed alpha
Helix 50	AF5	C	427	443	Right-handed alpha
Helix 51	AF6	C	446	462	Right-handed alpha

There are 15 sheets in PDB entry 7CFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	81	first strand
Strand 2	A	405	424	anti-parallel
Strand 3	A	269	280	parallel
Strand 4	A	371	375	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	405	424	anti-parallel
Strand 3	A	269	280	parallel
Strand 4	A	378	380	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	208	209	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	89	94	anti-parallel
Strand 4	A	245	250	anti-parallel
Strand 5	A	263	265	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	177	178	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	81	first strand
Strand 2	B	405	424	anti-parallel
Strand 3	B	269	280	parallel
Strand 4	B	371	375	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	405	424	anti-parallel
Strand 3	B	269	280	parallel
Strand 4	B	378	380	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	208	209	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	189	first strand
Strand 2	B	192	196	anti-parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	245	250	anti-parallel
Strand 5	B	263	265	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	177	178	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	81	first strand
Strand 2	C	405	424	anti-parallel
Strand 3	C	269	280	parallel
Strand 4	C	371	375	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	405	424	anti-parallel
Strand 3	C	269	280	parallel
Strand 4	C	378	380	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	208	209	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	189	first strand
Strand 2	C	192	196	anti-parallel
Strand 3	C	89	94	anti-parallel
Strand 4	C	245	250	anti-parallel
Strand 5	C	263	265	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	174	first strand
Strand 2	C	177	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CFS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CFS