Analysis of interatomic Contacts of Structural Units in PDB entry:
7CIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CIF entry

There are 4 chains in PDB entry 7CIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18HIS 393
A
 TRP 395ALA 556
B
 GLU 24HIS 393
B
 TRP 395PRO 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 7CIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 30Right-handed 310
Helix 2
AA2
A
38 60Right-handed alpha
Helix 3
AA3
A
69 77Right-handed alpha
Helix 4
AA4
A
78 80Right-handed 310
Helix 5
AA5
A
100 115Right-handed alpha
Helix 6
AA6
A
137 155Right-handed alpha
Helix 7
AA7
A
195 206Right-handed alpha
Helix 8
AA8
A
210 218Right-handed alpha
Helix 9
AA9
A
247 251Right-handed 310
Helix 10
AB1
A
256 270Right-handed alpha
Helix 11
AB2
A
290 305Right-handed alpha
Helix 12
AB3
A
339 342Right-handed 310
Helix 13
AB4
A
343 353Right-handed alpha
Helix 14
AB5
A
353 358Right-handed alpha
Helix 15
AB6
A
410 412Right-handed 310
Helix 16
AB7
A
436 448Right-handed alpha
Helix 17
AB8
A
449 479Right-handed alpha
Helix 18
AB9
A
499 507Right-handed alpha
Helix 19
AC1
A
519 521Right-handed 310
Helix 20
AC2
A
536 548Right-handed alpha
Helix 21
AC3
A
550 555Right-handed alpha
Helix 22
AC4
B
26 30Right-handed 310
Helix 23
AC5
B
38 60Right-handed alpha
Helix 24
AC6
B
69 77Right-handed alpha
Helix 25
AC7
B
78 80Right-handed 310
Helix 26
AC8
B
100 115Right-handed alpha
Helix 27
AC9
B
137 155Right-handed alpha
Helix 28
AD1
B
195 206Right-handed alpha
Helix 29
AD2
B
210 218Right-handed alpha
Helix 30
AD3
B
247 251Right-handed 310
Helix 31
AD4
B
256 270Right-handed alpha
Helix 32
AD5
B
290 305Right-handed alpha
Helix 33
AD6
B
339 342Right-handed 310
Helix 34
AD7
B
343 353Right-handed alpha
Helix 35
AD8
B
353 358Right-handed alpha
Helix 36
AD9
B
410 412Right-handed 310
Helix 37
AE1
B
436 448Right-handed alpha
Helix 38
AE2
B
449 479Right-handed alpha
Helix 39
AE3
B
499 507Right-handed alpha
Helix 40
AE4
B
519 521Right-handed 310
Helix 41
AE5
B
536 548Right-handed alpha
Helix 42
AE6
B
550 555Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7CIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
385 391anti-parallel
Strand 4
A
331 336parallel
Strand 5
A
274 279parallel
Strand 6
A
187 189parallel
Strand 7
A
208 209parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 317first strand
Strand 2
A
321 328anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
382 383anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 496first strand
Strand 2
A
523 530anti-parallel
Strand 3
A
510 514anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 134first strand
Strand 2
B
403 408anti-parallel
Strand 3
B
387 391anti-parallel
Strand 4
B
331 336parallel
Strand 5
B
274 279parallel
Strand 6
B
187 189parallel
Strand 7
B
208 209parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 316first strand
Strand 2
B
323 328anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 375first strand
Strand 2
B
381 383anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
492 496first strand
Strand 2
B
523 530anti-parallel
Strand 3
B
509 514anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il