Analysis of interatomic Contacts of Structural Units in PDB entry:
7CIK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CIK entry

There are 2 chains in PDB entry 7CIK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 58ASP 213
B
 PRO 58ASP 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7CIK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 69Right-handed alpha
Helix 2
AA2
A
88 102Right-handed alpha
Helix 3
AA3
A
122 143Right-handed alpha
Helix 4
AA4
A
185 198Right-handed alpha
Helix 5
AA5
A
204 206Right-handed 310
Helix 6
AA6
B
60 63Right-handed 310
Helix 7
AA7
B
64 72Right-handed alpha
Helix 8
AA8
B
88 92Right-handed alpha
Helix 9
AA9
B
93 98Right-handed alpha
Helix 10
AB1
B
122 143Right-handed alpha
Helix 11
AB2
B
144 146Right-handed 310
Helix 12
AB3
B
185 198Right-handed alpha
Helix 13
AB4
B
204 206Right-handed 310
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There are 4 sheets in PDB entry 7CIK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
108 114parallel
Strand 4
A
118 121anti-parallel
Strand 5
B
160 162anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 156first strand
Strand 2
A
171 178anti-parallel
Strand 3
A
208 212parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
B
118 121anti-parallel
Strand 3
B
108 115anti-parallel
Strand 4
B
84 87parallel
Strand 5
B
76 77anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 156first strand
Strand 2
B
171 178anti-parallel
Strand 3
B
208 212parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il