Analysis of interatomic Contacts of Structural Units in PDB entry:
7CIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CIP entry

There are 4 chains in PDB entry 7CIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4GLY 312
B
 THR 4GLY 312
C
 THR 4GLY 312
D
 THR 4GLY 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7CIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
30 46Right-handed alpha
Helix 3
AA3
A
100 112Right-handed alpha
Helix 4
AA4
A
129 144Right-handed alpha
Helix 5
AA5
A
145 150Right-handed 310
Helix 6
AA6
A
162 178Right-handed alpha
Helix 7
AA7
A
200 206Right-handed alpha
Helix 8
AA8
A
213 225Right-handed alpha
Helix 9
AA9
A
234 238Right-handed 310
Helix 10
AB1
A
256 270Right-handed alpha
Helix 11
AB2
A
285 289Right-handed 310
Helix 12
AB3
A
295 312Right-handed alpha
Helix 13
AB4
B
8 22Right-handed alpha
Helix 14
AB5
B
30 46Right-handed alpha
Helix 15
AB6
B
100 112Right-handed alpha
Helix 16
AB7
B
129 144Right-handed alpha
Helix 17
AB8
B
145 150Right-handed 310
Helix 18
AB9
B
162 178Right-handed alpha
Helix 19
AC1
B
200 206Right-handed alpha
Helix 20
AC2
B
213 225Right-handed alpha
Helix 21
AC3
B
234 238Right-handed 310
Helix 22
AC4
B
256 270Right-handed alpha
Helix 23
AC5
B
285 289Right-handed 310
Helix 24
AC6
B
294 312Right-handed alpha
Helix 25
AC7
C
8 22Right-handed alpha
Helix 26
AC8
C
25 29Right-handed 310
Helix 27
AC9
C
30 46Right-handed alpha
Helix 28
AD1
C
100 112Right-handed alpha
Helix 29
AD2
C
129 144Right-handed alpha
Helix 30
AD3
C
162 178Right-handed alpha
Helix 31
AD4
C
200 206Right-handed alpha
Helix 32
AD5
C
213 225Right-handed alpha
Helix 33
AD6
C
234 238Right-handed 310
Helix 34
AD7
C
256 270Right-handed alpha
Helix 35
AD8
C
285 289Right-handed 310
Helix 36
AD9
C
295 312Right-handed alpha
Helix 37
AE1
D
8 22Right-handed alpha
Helix 38
AE2
D
30 46Right-handed alpha
Helix 39
AE3
D
100 112Right-handed alpha
Helix 40
AE4
D
129 144Right-handed alpha
Helix 41
AE5
D
145 150Right-handed 310
Helix 42
AE6
D
162 178Right-handed alpha
Helix 43
AE7
D
200 206Right-handed alpha
Helix 44
AE8
D
213 225Right-handed alpha
Helix 45
AE9
D
234 238Right-handed 310
Helix 46
AF1
D
256 270Right-handed alpha
Helix 47
AF2
D
285 289Right-handed 310
Helix 48
AF3
D
295 312Right-handed alpha
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There are 6 sheets in PDB entry 7CIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 62first strand
Strand 2
A
65 73anti-parallel
Strand 3
A
115 118anti-parallel
Strand 4
A
81 87parallel
Strand 5
A
153 161parallel
Strand 6
A
188 190parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 251first strand
Strand 2
A
274 279parallel
Strand 3
B
274 279anti-parallel
Strand 4
B
246 251parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 60first strand
Strand 2
B
67 73anti-parallel
Strand 3
B
115 118anti-parallel
Strand 4
B
81 87parallel
Strand 5
B
153 161parallel
Strand 6
B
188 190parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 61first strand
Strand 2
C
66 73anti-parallel
Strand 3
C
115 118anti-parallel
Strand 4
C
81 87parallel
Strand 5
C
153 161parallel
Strand 6
C
188 190parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 251first strand
Strand 2
C
274 279parallel
Strand 3
D
274 279anti-parallel
Strand 4
D
246 251parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 60first strand
Strand 2
D
67 73anti-parallel
Strand 3
D
115 118anti-parallel
Strand 4
D
81 87parallel
Strand 5
D
153 161parallel
Strand 6
D
188 190parallel
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