Analysis of interatomic Contacts of Structural Units in PDB entry:
7CJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CJ0 entry

There are 8 chains in PDB entry 7CJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 THR 58ARG 134
F
 HIS 18GLY 101
G
 GLU 65ALA 124
D
 VAL 172GLY 248
B
 GLU 59ALA 135
C
 LEU 22PHE 100
H
 GLU 67GLY 125
A
 GLU 171LYS 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7CJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
63 76Right-handed alpha
Helix 2
AA2
E
85 114Right-handed alpha
Helix 3
AA3
E
120 132Right-handed alpha
Helix 4
AA4
F
24 29Right-handed 310
Helix 5
AA5
F
30 41Right-handed alpha
Helix 6
AA6
F
49 76Right-handed alpha
Helix 7
AA7
F
82 97Right-handed alpha
Helix 8
AA8
G
76 82Right-handed 310
Helix 9
AA9
G
106 123Right-handed alpha
Helix 10
AB1
D
174 208Right-handed alpha
Helix 11
AB2
D
212 243Right-handed alpha
Helix 12
AB3
D
243 248Right-handed alpha
Helix 13
AB4
B
63 77Right-handed alpha
Helix 14
AB5
B
86 114Right-handed alpha
Helix 15
AB6
B
120 132Right-handed alpha
Helix 16
AB7
C
24 29Right-handed 310
Helix 17
AB8
C
30 41Right-handed alpha
Helix 18
AB9
C
49 76Right-handed alpha
Helix 19
AC1
C
82 97Right-handed alpha
Helix 20
AC2
H
106 125Right-handed alpha
Helix 21
AC3
A
172 205Right-handed alpha
Helix 22
AC4
A
212 243Right-handed alpha
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There are 4 sheets in PDB entry 7CJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
Strand 3
G
70 71anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
H
95 96parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
C
45 46parallel
Strand 3
H
70 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il