Analysis of interatomic Contacts of Structural Units in PDB entry:
7CJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CJ2 entry

There are 6 chains in PDB entry 7CJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 1	VAL 214
D	ASP 1	ASN 211
A	TYR 1	ALA 361
B	TYR 1	ALA 361
K	GLU 1	GLU 215
L	ASP 1	LYS 208

There are 47 helices in PDB entry 7CJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	28	32	Right-handed 310
Helix 2	AA2	C	62	65	Right-handed 310
Helix 3	AA3	C	87	91	Right-handed 310
Helix 4	AA4	C	188	192	Right-handed 310
Helix 5	AA5	D	79	83	Right-handed 310
Helix 6	AA6	D	122	127	Right-handed alpha
Helix 7	AA7	D	184	190	Right-handed alpha
Helix 8	AA8	A	10	14	Right-handed 310
Helix 9	AA9	A	15	19	Right-handed 310
Helix 10	AB1	A	21	25	Right-handed 310
Helix 11	AB2	A	51	66	Right-handed alpha
Helix 12	AB3	A	81	91	Right-handed alpha
Helix 13	AB4	A	91	110	Right-handed alpha
Helix 14	AB5	A	122	124	Right-handed 310
Helix 15	AB6	A	125	144	Right-handed alpha
Helix 16	AB7	A	160	168	Right-handed alpha
Helix 17	AB8	A	169	177	Right-handed alpha
Helix 18	AB9	A	205	209	Right-handed 310
Helix 19	AC1	A	215	226	Right-handed alpha
Helix 20	AC2	A	229	231	Right-handed 310
Helix 21	AC3	A	274	282	Right-handed alpha
Helix 22	AC4	A	309	323	Right-handed alpha
Helix 23	AC5	A	332	336	Right-handed 310
Helix 24	AC6	A	349	361	Right-handed alpha
Helix 25	AC7	B	10	14	Right-handed 310
Helix 26	AC8	B	15	19	Right-handed 310
Helix 27	AC9	B	21	25	Right-handed 310
Helix 28	AD1	B	51	61	Right-handed alpha
Helix 29	AD2	B	62	64	Right-handed 310
Helix 30	AD3	B	78	80	Right-handed 310
Helix 31	AD4	B	81	91	Right-handed alpha
Helix 32	AD5	B	91	110	Right-handed alpha
Helix 33	AD6	B	122	124	Right-handed 310
Helix 34	AD7	B	125	143	Right-handed alpha
Helix 35	AD8	B	160	168	Right-handed alpha
Helix 36	AD9	B	169	177	Right-handed alpha
Helix 37	AE1	B	205	209	Right-handed 310
Helix 38	AE2	B	215	227	Right-handed alpha
Helix 39	AE3	B	229	231	Right-handed 310
Helix 40	AE4	B	275	283	Right-handed alpha
Helix 41	AE5	B	309	323	Right-handed alpha
Helix 42	AE6	B	332	336	Right-handed 310
Helix 43	AE7	B	349	361	Right-handed alpha
Helix 44	AE8	K	28	32	Right-handed 310
Helix 45	AE9	K	87	91	Right-handed 310
Helix 46	AF1	L	79	83	Right-handed 310
Helix 47	AF2	L	122	129	Right-handed alpha

There are 28 sheets in PDB entry 7CJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	109	113	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	109	113	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	102	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	179	187	anti-parallel
Strand 4	C	167	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	126	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	179	187	anti-parallel
Strand 4	C	172	173	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	213	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	66	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	130	140	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	160	164	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	193	198	anti-parallel
Strand 3	D	206	210	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	32	41	anti-parallel
Strand 3	A	70	76	parallel
Strand 4	A	113	117	parallel
Strand 5	A	152	158	parallel
Strand 6	A	179	183	parallel
Strand 7	A	233	238	parallel
Strand 8	A	327	331	parallel
Strand 9	A	2	8	parallel
Strand 10	A	32	41	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	272	273	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	303	306	anti-parallel
Strand 4	A	295	300	anti-parallel
Strand 5	A	286	290	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	32	41	anti-parallel
Strand 3	B	70	76	parallel
Strand 4	B	113	117	parallel
Strand 5	B	152	158	parallel
Strand 6	B	179	183	parallel
Strand 7	B	233	238	parallel
Strand 8	B	327	331	parallel
Strand 9	B	2	8	parallel
Strand 10	B	32	41	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	240	246	anti-parallel
Strand 3	B	272	274	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	240	246	anti-parallel
Strand 3	B	303	306	anti-parallel
Strand 4	B	296	300	anti-parallel
Strand 5	B	286	289	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	109	113	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	109	113	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	102	105	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	126	first strand
Strand 2	K	143	148	anti-parallel
Strand 3	K	179	184	anti-parallel
Strand 4	K	167	168	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	126	first strand
Strand 2	K	143	148	anti-parallel
Strand 3	K	179	184	anti-parallel
Strand 4	K	172	173	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	202	203	first strand
Strand 2	K	208	209	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	161	164	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	150	first strand
Strand 2	L	194	198	anti-parallel
Strand 3	L	206	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CJ2