Analysis of interatomic Contacts of Structural Units in PDB entry:
7CJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CJ4 entry

There are 2 chains in PDB entry 7CJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 287
B
 ALA 2GLY 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7CJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
21 36Right-handed alpha
Helix 3
AA3
A
51 62Right-handed alpha
Helix 4
AA4
A
73 77Right-handed 310
Helix 5
AA5
A
82 103Right-handed alpha
Helix 6
AA6
A
124 144Right-handed alpha
Helix 7
AA7
A
164 176Right-handed alpha
Helix 8
AA8
A
186 193Right-handed alpha
Helix 9
AA9
A
197 204Right-handed alpha
Helix 10
AB1
A
226 237Right-handed alpha
Helix 11
AB2
A
256 261Right-handed alpha
Helix 12
AB3
A
270 286Right-handed alpha
Helix 13
AB4
B
14 16Right-handed 310
Helix 14
AB5
B
21 36Right-handed alpha
Helix 15
AB6
B
51 63Right-handed alpha
Helix 16
AB7
B
73 77Right-handed 310
Helix 17
AB8
B
82 103Right-handed alpha
Helix 18
AB9
B
124 144Right-handed alpha
Helix 19
AC1
B
164 176Right-handed alpha
Helix 20
AC2
B
186 193Right-handed alpha
Helix 21
AC3
B
197 204Right-handed alpha
Helix 22
AC4
B
226 237Right-handed alpha
Helix 23
AC5
B
254 261Right-handed alpha
Helix 24
AC6
B
270 286Right-handed alpha
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There are 2 sheets in PDB entry 7CJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
39 43parallel
Strand 3
A
65 69parallel
Strand 4
A
107 109parallel
Strand 5
A
148 152parallel
Strand 6
A
180 185parallel
Strand 7
A
207 212parallel
Strand 8
A
242 245parallel
Strand 9
A
8 12parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
39 43parallel
Strand 3
B
65 69parallel
Strand 4
B
107 110parallel
Strand 5
B
148 152parallel
Strand 6
B
180 185parallel
Strand 7
B
207 212parallel
Strand 8
B
242 245parallel
Strand 9
B
8 12parallel
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