Analysis of interatomic Contacts of Structural Units in PDB entry:
7CJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CJ9 entry

There are 5 chains in PDB entry 7CJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 286
B	MET 1	LYS 290
C	HIS -1	LEU 286
D	MET 1	ILE 289
E	MET 1	ASN 148

There are 93 helices in PDB entry 7CJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	16	Right-handed 310
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	51	62	Right-handed alpha
Helix 4	AA4	A	73	77	Right-handed 310
Helix 5	AA5	A	82	103	Right-handed alpha
Helix 6	AA6	A	124	144	Right-handed alpha
Helix 7	AA7	A	164	176	Right-handed alpha
Helix 8	AA8	A	186	193	Right-handed alpha
Helix 9	AA9	A	197	204	Right-handed alpha
Helix 10	AB1	A	226	237	Right-handed alpha
Helix 11	AB2	A	270	286	Right-handed alpha
Helix 12	AB3	B	14	16	Right-handed 310
Helix 13	AB4	B	21	36	Right-handed alpha
Helix 14	AB5	B	51	62	Right-handed alpha
Helix 15	AB6	B	73	77	Right-handed 310
Helix 16	AB7	B	82	103	Right-handed alpha
Helix 17	AB8	B	124	144	Right-handed alpha
Helix 18	AB9	B	164	176	Right-handed alpha
Helix 19	AC1	B	186	193	Right-handed alpha
Helix 20	AC2	B	197	204	Right-handed alpha
Helix 21	AC3	B	226	237	Right-handed alpha
Helix 22	AC4	B	270	288	Right-handed alpha
Helix 23	AC5	C	14	16	Right-handed 310
Helix 24	AC6	C	21	36	Right-handed alpha
Helix 25	AC7	C	51	62	Right-handed alpha
Helix 26	AC8	C	73	77	Right-handed 310
Helix 27	AC9	C	82	103	Right-handed alpha
Helix 28	AD1	C	124	144	Right-handed alpha
Helix 29	AD2	C	164	176	Right-handed alpha
Helix 30	AD3	C	186	193	Right-handed alpha
Helix 31	AD4	C	197	204	Right-handed alpha
Helix 32	AD5	C	226	237	Right-handed alpha
Helix 33	AD6	C	254	261	Right-handed alpha
Helix 34	AD7	C	270	286	Right-handed alpha
Helix 35	AD8	D	14	16	Right-handed 310
Helix 36	AD9	D	21	36	Right-handed alpha
Helix 37	AE1	D	51	62	Right-handed alpha
Helix 38	AE2	D	73	77	Right-handed 310
Helix 39	AE3	D	82	103	Right-handed alpha
Helix 40	AE4	D	124	144	Right-handed alpha
Helix 41	AE5	D	164	176	Right-handed alpha
Helix 42	AE6	D	186	193	Right-handed alpha
Helix 43	AE7	D	197	204	Right-handed alpha
Helix 44	AE8	D	226	237	Right-handed alpha
Helix 45	AE9	D	270	288	Right-handed alpha
Helix 46	AF1	E	14	16	Right-handed 310
Helix 47	AF2	E	21	36	Right-handed alpha
Helix 48	AF3	E	51	62	Right-handed alpha
Helix 49	AF4	E	73	77	Right-handed 310
Helix 50	AF5	E	82	103	Right-handed alpha
Helix 51	AF6	E	124	144	Right-handed alpha
Helix 52	AF7	E	164	176	Right-handed alpha
Helix 53	AF8	E	186	193	Right-handed alpha
Helix 54	AF9	E	197	204	Right-handed alpha
Helix 55	AG1	E	226	237	Right-handed alpha
Helix 56	AG2	E	254	261	Right-handed alpha
Helix 57	AG3	E	270	288	Right-handed alpha
Helix 58	AG4	F	14	16	Right-handed 310
Helix 59	AG5	F	21	36	Right-handed alpha
Helix 60	AG6	F	46	50	Right-handed 310
Helix 61	AG7	F	51	62	Right-handed alpha
Helix 62	AG8	F	73	77	Right-handed 310
Helix 63	AG9	F	82	103	Right-handed alpha
Helix 64	AH1	F	124	144	Right-handed alpha
Helix 65	AH2	F	164	176	Right-handed alpha
Helix 66	AH3	F	186	193	Right-handed alpha
Helix 67	AH4	F	197	204	Right-handed alpha
Helix 68	AH5	F	226	237	Right-handed alpha
Helix 69	AH6	F	254	261	Right-handed alpha
Helix 70	AH7	F	270	286	Right-handed alpha
Helix 71	AH8	G	14	16	Right-handed 310
Helix 72	AH9	G	21	36	Right-handed alpha
Helix 73	AI1	G	51	62	Right-handed alpha
Helix 74	AI2	G	73	77	Right-handed 310
Helix 75	AI3	G	82	103	Right-handed alpha
Helix 76	AI4	G	124	144	Right-handed alpha
Helix 77	AI5	G	164	176	Right-handed alpha
Helix 78	AI6	G	186	193	Right-handed alpha
Helix 79	AI7	G	197	204	Right-handed alpha
Helix 80	AI8	G	226	237	Right-handed alpha
Helix 81	AI9	G	254	259	Right-handed alpha
Helix 82	AJ1	G	270	286	Right-handed alpha
Helix 83	AJ2	H	14	16	Right-handed 310
Helix 84	AJ3	H	21	36	Right-handed alpha
Helix 85	AJ4	H	51	62	Right-handed alpha
Helix 86	AJ5	H	73	77	Right-handed 310
Helix 87	AJ6	H	82	103	Right-handed alpha
Helix 88	AJ7	H	124	144	Right-handed alpha
Helix 89	AJ8	H	164	176	Right-handed alpha
Helix 90	AJ9	H	186	193	Right-handed alpha
Helix 91	AK1	H	197	204	Right-handed alpha
Helix 92	AK2	H	226	237	Right-handed alpha
Helix 93	AK3	H	270	287	Right-handed alpha

There are 8 sheets in PDB entry 7CJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	39	43	parallel
Strand 3	A	65	72	parallel
Strand 4	A	107	115	parallel
Strand 5	A	148	152	parallel
Strand 6	A	180	185	parallel
Strand 7	A	207	212	parallel
Strand 8	A	242	245	parallel
Strand 9	A	8	12	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	39	43	parallel
Strand 3	B	65	72	parallel
Strand 4	B	107	115	parallel
Strand 5	B	148	152	parallel
Strand 6	B	180	185	parallel
Strand 7	B	207	212	parallel
Strand 8	B	242	245	parallel
Strand 9	B	8	12	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	39	43	parallel
Strand 3	C	65	72	parallel
Strand 4	C	107	115	parallel
Strand 5	C	148	152	parallel
Strand 6	C	180	185	parallel
Strand 7	C	207	212	parallel
Strand 8	C	242	245	parallel
Strand 9	C	8	12	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	39	43	parallel
Strand 3	D	65	72	parallel
Strand 4	D	107	115	parallel
Strand 5	D	148	152	parallel
Strand 6	D	180	185	parallel
Strand 7	D	207	212	parallel
Strand 8	D	242	245	parallel
Strand 9	D	8	12	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	12	first strand
Strand 2	E	39	43	parallel
Strand 3	E	65	72	parallel
Strand 4	E	107	115	parallel
Strand 5	E	148	152	parallel
Strand 6	E	180	185	parallel
Strand 7	E	207	212	parallel
Strand 8	E	242	245	parallel
Strand 9	E	8	12	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	12	first strand
Strand 2	F	39	43	parallel
Strand 3	F	65	72	parallel
Strand 4	F	107	115	parallel
Strand 5	F	148	152	parallel
Strand 6	F	180	185	parallel
Strand 7	F	207	212	parallel
Strand 8	F	242	245	parallel
Strand 9	F	8	12	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	12	first strand
Strand 2	G	39	43	parallel
Strand 3	G	65	72	parallel
Strand 4	G	107	115	parallel
Strand 5	G	148	152	parallel
Strand 6	G	180	185	parallel
Strand 7	G	207	212	parallel
Strand 8	G	242	245	parallel
Strand 9	G	8	12	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	12	first strand
Strand 2	H	39	43	parallel
Strand 3	H	65	72	parallel
Strand 4	H	107	115	parallel
Strand 5	H	148	152	parallel
Strand 6	H	180	185	parallel
Strand 7	H	207	212	parallel
Strand 8	H	242	245	parallel
Strand 9	H	8	12	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CJ9