Analysis of interatomic Contacts of Structural Units in PDB entry:
7CJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CJB entry

There are 17 chains in PDB entry 7CJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 60	ILE 206
B	SER 0	PRO 105
C	GLY 15	CYS 112
D	LEU 190	ALA 194
D	GLU 196	ASN 199
E	PRO 59	ALA 207
F	SER 0	PRO 105
G	SER 16	CYS 112
H	TYR 191	ALA 194
H	GLU 196	HIS 197
I	PRO 61	ALA 207
J	MET 1	PRO 105
K	PRO 14	CYS 112
L	LEU 190	ALA 194
L	GLU 196	LEU 198
M	PRO 61	ALA 207
N	ASP 2	LYS 46

There are 53 helices in PDB entry 7CJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	141	145	Right-handed 310
Helix 2	AA2	A	157	170	Right-handed alpha
Helix 3	AA3	A	171	178	Right-handed 310
Helix 4	AA4	A	181	190	Right-handed alpha
Helix 5	AA5	A	193	205	Right-handed alpha
Helix 6	AA6	B	23	36	Right-handed alpha
Helix 7	AA7	B	38	40	Right-handed 310
Helix 8	AA8	B	100	104	Right-handed 310
Helix 9	AA9	C	33	37	Right-handed alpha
Helix 10	AB1	C	39	46	Right-handed alpha
Helix 11	AB2	C	66	84	Right-handed alpha
Helix 12	AB3	C	96	98	Right-handed 310
Helix 13	AB4	C	99	111	Right-handed alpha
Helix 14	AB5	E	141	145	Right-handed 310
Helix 15	AB6	E	157	170	Right-handed alpha
Helix 16	AB7	E	171	178	Right-handed 310
Helix 17	AB8	E	181	190	Right-handed alpha
Helix 18	AB9	E	193	205	Right-handed alpha
Helix 19	AC1	F	23	36	Right-handed alpha
Helix 20	AC2	F	38	42	Right-handed 310
Helix 21	AC3	F	57	61	Right-handed 310
Helix 22	AC4	F	100	104	Right-handed 310
Helix 23	AC5	G	33	37	Right-handed alpha
Helix 24	AC6	G	39	46	Right-handed alpha
Helix 25	AC7	G	66	84	Right-handed alpha
Helix 26	AC8	G	96	98	Right-handed 310
Helix 27	AC9	G	99	111	Right-handed alpha
Helix 28	AD1	I	157	170	Right-handed alpha
Helix 29	AD2	I	171	178	Right-handed 310
Helix 30	AD3	I	181	190	Right-handed alpha
Helix 31	AD4	I	193	205	Right-handed alpha
Helix 32	AD5	J	23	36	Right-handed alpha
Helix 33	AD6	J	38	40	Right-handed 310
Helix 34	AD7	J	100	104	Right-handed 310
Helix 35	AD8	K	33	37	Right-handed alpha
Helix 36	AD9	K	39	46	Right-handed alpha
Helix 37	AE1	K	66	84	Right-handed alpha
Helix 38	AE2	K	96	98	Right-handed 310
Helix 39	AE3	K	99	111	Right-handed alpha
Helix 40	AE4	M	141	145	Right-handed 310
Helix 41	AE5	M	157	170	Right-handed alpha
Helix 42	AE6	M	171	178	Right-handed 310
Helix 43	AE7	M	181	190	Right-handed alpha
Helix 44	AE8	M	193	205	Right-handed alpha
Helix 45	AE9	N	23	36	Right-handed alpha
Helix 46	AF1	N	38	40	Right-handed 310
Helix 47	AF2	N	56	61	Right-handed alpha
Helix 48	AF3	N	100	104	Right-handed 310
Helix 49	AF4	O	33	37	Right-handed alpha
Helix 50	AF5	O	39	46	Right-handed alpha
Helix 51	AF6	O	66	84	Right-handed alpha
Helix 52	AF7	O	96	98	Right-handed 310
Helix 53	AF8	O	99	111	Right-handed alpha

There are 14 sheets in PDB entry 7CJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	112	first strand
Strand 2	A	71	78	anti-parallel
Strand 3	A	147	152	parallel
Strand 4	A	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	116	121	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	73	81	anti-parallel
Strand 4	B	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	73	81	anti-parallel
Strand 4	B	2	9	parallel
Strand 5	B	12	19	anti-parallel
Strand 6	C	28	32	parallel
Strand 7	C	18	22	anti-parallel
Strand 8	C	59	61	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	112	first strand
Strand 2	E	71	78	anti-parallel
Strand 3	E	147	152	parallel
Strand 4	E	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	97	first strand
Strand 2	E	84	89	anti-parallel
Strand 3	E	116	121	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	45	first strand
Strand 2	F	73	78	anti-parallel
Strand 3	F	2	9	parallel
Strand 4	F	12	19	anti-parallel
Strand 5	G	28	32	parallel
Strand 6	G	18	22	anti-parallel
Strand 7	G	59	61	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	130	first strand
Strand 2	I	147	152	anti-parallel
Strand 3	I	71	78	parallel
Strand 4	I	106	112	anti-parallel
Strand 5	L	196	197	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	95	97	first strand
Strand 2	I	84	89	anti-parallel
Strand 3	I	116	121	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	50	first strand
Strand 2	J	42	46	anti-parallel
Strand 3	J	73	79	anti-parallel
Strand 4	J	2	9	parallel
Strand 5	J	12	19	anti-parallel
Strand 6	K	28	32	parallel
Strand 7	K	18	22	anti-parallel
Strand 8	K	59	61	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	106	112	first strand
Strand 2	M	71	78	anti-parallel
Strand 3	M	147	152	parallel
Strand 4	M	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	95	97	first strand
Strand 2	M	84	89	anti-parallel
Strand 3	M	116	121	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	49	50	first strand
Strand 2	N	42	46	anti-parallel
Strand 3	N	73	81	anti-parallel
Strand 4	N	84	85	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	49	50	first strand
Strand 2	N	42	46	anti-parallel
Strand 3	N	73	81	anti-parallel
Strand 4	N	3	9	parallel
Strand 5	N	12	18	anti-parallel
Strand 6	O	28	32	parallel
Strand 7	O	18	22	anti-parallel
Strand 8	O	59	61	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CJB